NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK439
Library SL
(Link to library)
Clone ID SLK439
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15249-1
Original site URL
Representative seq. ID SLK439P
(Link to Original site)
Representative DNA sequence 
>SLK439 (SLK439Q) /CSM/SL/SLK4-B/SLK439Q.Seq.d/
AGAAAACCACAAAGAAAGATATCGAAAACACCAATAAAGATATTAGATGCTCCAATGATA
AAAGATGACTTTTATTTAAATTTAATTGATTGGAGTTCACATAATATTTTAGCTGTAGGT
TTGGATACTAGTGTTTATCTTTGGAATGCAACTACAAGCCAAGTTTCAAAACTTTGTGAA
ATGGAATCAGGTCAACCAGTTTCATCAGTTGGTTGGATACAACGTGGTGGTATTCATTTG
GCAATTGGTGGTACTGATGGTXXXXXXXXXXCATTTTATAATAAAAAAGGTCTAGATATA
AGATAAAAAGAAAAAATAAAAAATAAAAAAAAAAATTATAAAATAACCTCAGCTTTACAT
TTTGATAAATAAAAAAAAAAAAAAAAAAAAAAATTATCTGTTTACTTTTTTGTAACAAAA
CAGGAA
sequence update 1999. 3. 8
Translated Amino Acid sequence 
RKPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQVSKLCE
MESGQPVSSVGWIQRGGIHLAIGGTDG---

---FYNKKGLDIR*kekiknkkknykitsalhfdk*kkkkkkklsvyffvtkqe
Translated Amino Acid sequence (All Frames) 
Frame A:
RKPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQVSKLCE
MESGQPVSSVGWIQRGGIHLAIGGTDG---

---hfiikkv*i*dkkkk*kikkkiik*pqlyilinkkkkkkknylftfl*qnr

Frame B:
enhkeryrkhq*ry*mlq**kmtfi*i*ligvhiif*l*vwilvfifgmqlqakfqnfvk
wnqvnqfhqlvgynvvvfiwqlvvlm---

---il**krsrykikrknkk*kkkl*nnlsftf**ikkkkkkkiicllfcnktg

Frame C:
kttkkdientnkdircsndkr*llfkfn*left*yfscrfgy*clslecnykpsfktl*n
girstsfiswldttwwysfgnwwy*w---

---FYNKKGLDIR*kekiknkkknykitsalhfdk*kkkkkkklsvyffvtkqe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK439 (SLK439Q) /CSM/SL/SLK4-B/SLK439Q.Seq.d/                        517   e-146
SLK161 (SLK161Q) /CSM/SL/SLK1-C/SLK161Q.Seq.d/                        517   e-146
SSG144 (SSG144Q) /CSM/SS/SSG1-B/SSG144Q.Seq.d/                        424   e-118
AFM131 (AFM131Q) /CSM/AF/AFM1-B/AFM131Q.Seq.d/                        400   e-111
VSF565 (VSF565Q) /CSM/VS/VSF5-C/VSF565Q.Seq.d/                        383   e-105
SFJ337 (SFJ337Q) /CSM/SF/SFJ3-B/SFJ337Q.Seq.d/                        319   2e-86
SSG240 (SSG240Q) /CSM/SS/SSG2-B/SSG240Q.Seq.d/                        301   4e-81
SSL658 (SSL658Q) /CSM/SS/SSL6-C/SSL658Q.Seq.d/                         62   7e-09
SFI683 (SFI683Q) /CSM/SF/SFI6-D/SFI683Q.Seq.d/                         38   0.10
SFI148 (SFI148Q) /CSM/SF/SFI1-B/SFI148Q.Seq.d/                         38   0.10
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115053|AC115053.4 Mus musculus clone RP24-341E20, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48  0.086  1
AZ678858|AZ678858.1 ENTMO88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46  0.34  1
BX511258|BX511258.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38  0.69  2
AC131339|AC131339.2 Mus musculus chromosome UNK clone RP23-226F20, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44  1.3  1
AJ566406|AJ566406.1 Paramecium tetraurelia macronuclear nd6 gene and fizzy1 gene for  fizzy related protein.    44  1.3  1
BW201343|BW201343.1 Ciona intestinalis cDNA, clone:cicl077k24, 5' end, single read.    44  1.3  1
AZ548945|AZ548945.1 ENTEE35TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  1.3  1
BW219775|BW219775.1 Ciona intestinalis cDNA, clone:cieg097f24, 5' end, single read.    44  1.3  1
BH131831|BH131831.1 ENTMY86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  1.3  1
BW210532|BW210532.1 Ciona intestinalis cDNA, clone:cieg064i13, 5' end, single read.    44  1.3  1
dna update 2003. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001327_500(CP001327|pid:none) Micromonas sp. RCC299 chromosome...   117   9e-26
DQ059035_1(DQ059035|pid:none) Lotus corniculatus var. japonicus ...   112   4e-24
DQ059036_1(DQ059036|pid:none) Pisum sativum cell cycle switch pr...   112   5e-24
AF079404_1(AF079404|pid:none) Medicago sativa subsp. X varia cel...   112   5e-24
AK070642_1(AK070642|pid:none) Oryza sativa Japonica Group cDNA c...   111   7e-24
AC098695_13(AC098695|pid:none) Oryza sativa (japonica cultivar-g...   111   7e-24
BC162059_1(BC162059|pid:none) Rattus norvegicus fizzy/cell divis...   111   9e-24
BC048038_1(BC048038|pid:none) Danio rerio fizzy/cell division cy...   111   9e-24
AF102507_1(AF102507|pid:none) Homo sapiens fizzy-related protein...   111   9e-24
BC109826_1(BC109826|pid:none) Bos taurus fizzy/cell division cyc...   111   9e-24
protein update 2009. 6. 7
PSORT 

 psg: 0.69  gvh: 0.49  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for SLK439 is mit
5' end seq. ID SLK439F
5' end seq. 
>SLK439F.Seq
AGAAAACCACAAAGAAAGATATCGAAAACACCAATAAAGATATTAGATGCTCCAATGATA
AAAGATGACTTTTATTTAAATTTAATTGATTGGAGTTCACATAATATTTTAGCTGTAGGT
TTGGATACTAGTGTTTATCTTTGGAATGCAACTACAAGCCAAGTTTCAAAACTTTGTGAA
ATGGAATCAGGTCAACCAGTTTCATCAGTTGGTTGGATACAACGTGGTGGTATTCATTTG
GCAATTGGTGGTACTGATGGT----------
Length of 5' end seq. 261
3' end seq. ID SLK439Z
3' end seq. 
>SLK439Z.Seq
----------CATTTTATAATAAAAAAGGTCTAGATATAAGATAAAAAGAAAAAATAAAA
AATAAAAAAAAAAATTATAAAATAACCTCAGCTTTACATTTTGATAAATAAAAAAAAAAA
AAAAAAAAAAAATTATCTGTTTACTTTTTTGTAACAAAACAGGAA
Length of 3' end seq. 155
Connected seq. ID SLK439P
Connected seq. 
>SLK439P.Seq
AGAAAACCACAAAGAAAGATATCGAAAACACCAATAAAGATATTAGATGCTCCAATGATA
AAAGATGACTTTTATTTAAATTTAATTGATTGGAGTTCACATAATATTTTAGCTGTAGGT
TTGGATACTAGTGTTTATCTTTGGAATGCAACTACAAGCCAAGTTTCAAAACTTTGTGAA
ATGGAATCAGGTCAACCAGTTTCATCAGTTGGTTGGATACAACGTGGTGGTATTCATTTG
GCAATTGGTGGTACTGATGGT----------CATTTTATAATAAAAAAGGTCTAGATATA
AGATAAAAAGAAAAAATAAAAAATAAAAAAAAAAATTATAAAATAACCTCAGCTTTACAT
TTTGATAAATAAAAAAAAAAAAAAAAAAAAAAATTATCTGTTTACTTTTTTGTAACAAAA
CAGGAA
Length of connected seq. 416
Full length Seq ID -
Full length Seq. -
Length of full length seq. -