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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA556
Library SS
(Link to library)
Clone ID SSA556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15540-1
Original site URL
Representative seq. ID SSA556F
(Link to Original site)
Representative DNA sequence 
>SSA556 (SSA556Q) /CSM/SS/SSA5-C/SSA556Q.Seq.d/
GATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCC
ATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAAT
GCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAAT
GTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAA
ACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAAT
AACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGC
AGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACA
AATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTT
CCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCT
TTTGCTTAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
DDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILDGN
VYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPMCC
SGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQRFE*iinnnnnip
fa*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
DDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKALILDGN
VYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDGGFTLSLKPMCC
SGHNSHIPLYFHFTLTNPLTNEVVLQSLINVNVKQWKKSVPNKSKKQRFE*iinnnnnip
fa*kkkkkk


Frame B:
mikpvslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqmsmrkl*fwmam
stmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmvvslsp*sqcva
vvitlishstftlplqihsqmklysnhslmlmlsngknqfqinrknkdlnk*liiiiifl
llkkkkkkk


Frame C:
**nryl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqtttrcq*esfdfgwqc
lrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrwwfhsllkanvlq
ws*lsyptllslypyksthk*sctpith*c*c*amekissk*iektki*inn*****ysf
clkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA556 (SSA556Q) /CSM/SS/SSA5-C/SSA556Q.Seq.d/                       1007   0.0
SLI323 (SLI323Q) /CSM/SL/SLI3-A/SLI323Q.Seq.d/                       1007   0.0
SLG821 (SLG821Q) /CSM/SL/SLG8-A/SLG821Q.Seq.d/                       1007   0.0
SLA117 (SLA117Q) /CSM/SL/SLA1-A/SLA117Q.Seq.d/                       1007   0.0
CHC177 (CHC177Q) /CSM/CH/CHC1-D/CHC177Q.Seq.d/                       1005   0.0
SHA777 (SHA777Q) /CSM/SH/SHA7-D/SHA777Q.Seq.d/                       1003   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                       1003   0.0
AFN878 (AFN878Q) /CSM/AF/AFN8-D/AFN878Q.Seq.d/                        991   0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                        987   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                        987   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL132975|AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.    46   0.53   1
AC079567|AC079567.1 Mus musculus clone RP23-63L14, WORKING DRAFT SEQUENCE, 38 unordered pieces.    38   0.65   2
AP005892|AP005892.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16, WORKING DRAFT SEQUENCE, 1 ordered pieces.    32   1.0    2
BX682233|BX682233.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-177P5.    44   2.1    1
AL844887|AL844887.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   2.1    1
BZ357781|BZ357781.1 SALK_131235.56.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_131235.56.00.x, DNA sequence.    44   2.1    1
AC096647|AC096647.1 Homo sapiens BAC clone RP11-2G16 from 2, complete sequence.    34   2.1    5
AC126376|AC126376.2 Homo sapiens chromosome 8 clone CTD-3079P18 map 8, LOW-PASS SEQUENCE SAMPLING.    36   2.9    2
AL157709|AL157709.17 Human DNA sequence from clone RP11-164C1 on chromosome 10.    42   3.6    3
AC016679|AC016679.9 Homo sapiens BAC clone RP11-58C7 from 2, complete sequence.    32   4.3    5
dna update 2004. 1. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000040_1129(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   1.8
EU546237_1(EU546237|pid:none) Simarouba berteroana voucher WT 14...    34   3.1
EU042882_1(EU042882|pid:none) Samadera indica voucher JTH 138 tr...    34   3.1
EU042885_1(EU042885|pid:none) Simaba glabra voucher Ratter et al...    33   5.4
AM910989_21(AM910989|pid:none) Plasmodium knowlesi strain H chro...    33   7.0
EU042860_1(EU042860|pid:none) Hannoa chlorantha voucher D.K. Har...    33   7.0
EU042892_1(EU042892|pid:none) Simaba guianensis voucher Martin T...    32   9.2
EU042890_1(EU042890|pid:none) Simaba glabra voucher J.A. Ratter ...    32   9.2
EU042902_1(EU042902|pid:none) Simarouba versicolor voucher Nee 3...    32   9.2
(P07773) RecName: Full=Catechol 1,2-dioxygenase;          EC=1.1...    32   9.2
protein update 2009. 3. 5
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA556 is cyt
5' end seq. ID SSA556F
5' end seq. 
>SSA556F.Seq
GATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCC
ATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAAT
GCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAAT
GTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAA
ACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAAT
AACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGC
AGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACA
AATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTT
CCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCT
TTTGCTTAAAAAAAAAAAAAAAAAAAAA
Length of 5' end seq. 568
3' end seq. ID SSA556Z
3' end seq. 
>SSA556Z.Seq
----------TTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAA
TGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCA
AACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAA
TAACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTG
CAGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCAC
AAATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGT
TCCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCC
TTTTGCTTAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 439
Connected seq. ID SSA556P
Connected seq. 
>SSA556P.Seq
GATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCC
ATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAAT
GCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAAT
GTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAA
ACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAAT
AACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGC
AGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACA
AATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTT
CCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCT
TTTGCTTAAAAAAAAAAAAAAAAAAAAA----------TTCAAACAACAACCAGATGTCA
ATGAGAAAGCTTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACA
ACTGTAAAATCTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATG
CAAAAGGTAAAGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGGTGGTT
TCACTCTCTCCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACT
TTCACTTTACCCTTACAAATCCACTCACAAATGAAGTTGTACTCCAATCACTCATTAATG
TTAATGTTAAGCAATGGAAAAAATCAGTTCCAAATAAATCGAAAAAACAAAGATTTGAAT
AAATAATTAATAATAATAATAATATTCCTTTTGCTTAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1007
Full length Seq ID SSA556E
Full length Seq. 
>SSA556E.Seq
GATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGCATTCAATAATCCACAAGCC
ATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTCACTCGGTTACAGTGGTAAT
GCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGCTTTGATTTTGGATGGCAAT
GTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAATCTGTACCGAATATTATCAA
ACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAAAGTTCTTTTGGTCAAAAAT
AACATATTAACTCGTGTCAAAGATGGTGGTTTCACTCTCTCCTTAAAGCCAATGTGTTGC
AGTGGTCATAACTCTCATATCCCACTCTACTTTCACTTTACCCTTACAAATCCACTCACA
AATGAAGTTGTACTCCAATCACTCATTAATGTTAATGTTAAGCAATGGAAAAAATCAGTT
CCAAATAAATCGAAAAAACAAAGATTTGAATAAATAATTAATAATAATAATAATATTCCT
TTTGCTTAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 568