AFK789
Library AF
(Link to library)
Clone ID AFK789
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15020-1
Original site URL
Representative seq. ID AFK789P
(Link to Original site)
Representative DNA sequence
>AFK789 (AFK789Q) /CSM/AF/AFK7-D/AFK789Q.Seq.d/
TTATTCATATAAATTTTAATATTAAAATTAAAATATGAAATTAAATTATTTAATTTCTAT
ATTATTATTTTTAATAATAAATTATTCATCATTTGTAAGTAGTATAAACATTTTTAAAGA
TATCAATATAATCTATGATCATTTAAAGGATGACATAAAAGAGATTATTGTTGATGCAAC
TACAACAGTGAATCATGTAGAATACTTTATTGATATAGTGAATAGCAATGGATACCCATG
TGAGCATCATTCAGTTATAACAGAAGATGGTTATATATTGGGTGTATTTAGAATTCCATA
TTCTTATAACAATAATCAAAATCTTAATAATAAAACTAGACAACCAATTCTATTGCAACA
TGGTTTATTAGACTCATCGATAACATGGATAGTTAATAATGCAAATCAATCACTACCATT
CATATTATCAGATATGGGATACGATGTATGGATGGGTAATAACCCGTGGTAATACATTTA
GTATCAATCATACTAGATTGGATGTAAAGAGTAGAGAATTTTGGGAATTCTCATTCGATG
ATATGGGGTTGGTACGATCTACCATCAATGGTTGATTATATCAXXXXXXXXXXATGGTTA
TNTGGNCCNCANAAAGGNGCCTTCAATCAATCAANAANGCCATTTGTAAGTGGNAATGAA
CCTGGNGGNACTTCNCTTANAAANATGGNCCNTTTCNCNCAATTAGNAAATTCAAAACNA
TTTCAACNTTATGATTANGGAGNTATTGGNAATTTANTACNTTATGGTCATGAAAAACCC
CCNTTAATTAATGTTNAAAANANACCCCCNACTGNAAANATTGCNTTATTNTCTGGGACA
AAGGATGAATTGGCAGACCCNANANATGNAAAGCNATTAGNATCNCTCTTACCNCCTGAA
ACNAAACNCNCTTGGGACANAATTGAAAANTANGCNCNTTTAGATTTTGNTTGGGCNA
sequence update 2001. 6. 1
Translated Amino Acid sequence
lfi*ililklkyeiklfnfyiiifnnklfiick*ykhf*ryqynl*sfkg*hkrdyc*cn
ynsescrily*yse*qwipm*asfsynrrwlyigci*nsifl*q*sks***n*ttnsiat
wfirlidnmds**cksittihiirygircmdg**pvvihlvsiildwm*RVENFGNSHSM
IWGWYDLPSMVDYI---

---WLXGPXKGAFNQSXXPFVSGNEPGGTSLXXMXXFXQLXNSKXFQXYDXGXIGNLXXY
GHEKPPLINVXXXPPTXXIALXSGTKDELADPXXXKXLXSLLPPETKXXWDXIEXXAXLD
FXWA


Translated Amino Acid sequence (All Frames)
Frame A:
lfi*ililklkyeiklfnfyiiifnnklfiick*ykhf*ryqynl*sfkg*hkrdyc*cn
ynsescrily*yse*qwipm*asfsynrrwlyigci*nsifl*q*sks***n*ttnsiat
wfirlidnmds**cksittihiirygircmdg**pvvihlvsiildwm*RVENFGNSHSM
IWGWYDLPSMVDYI---

---mvxwxxxrxlqsixxaickwx*twxxfxxkxgpfxxixkfktistl*lxxywxfxtl
ws*ktpxn*cxkxtpxxkxcxixwdkg*igrpxxxkaixixltx*nxtxlgxn*kxxxfr
fxlg

Frame B:
ysykf*y*n*nmklnylisillfliinyssfvssinifkdiniiydhlkddikeiivdat
ttvnhveyfidivnsngypcehhsvitedgyilgvfripysynnnqnlnnktrqpillqh
glldssitwivnnanqslpfilsdmgydvwmgnnpw*yi*yqsy*igcke*rilgilir*
ygvgtiyhqwliis---

---WLXGPXKGAFNQSXXPFVSGNEPGGTSLXXMXXFXQLXNSKXFQXYDXGXIGNLXXY
GHEKPPLINVXXXPPTXXIALXSGTKDELADPXXXKXLXSLLPPETKXXWDXIEXXAXLD
FXWA

Frame C:
ihinfnikiki*n*ii*flyyyf***iihhl*vv*tflkisi*smii*rmt*krlllmql
qq*im*ntlli**iamdthvsiiql*qkmviywvylefhilitiikiliikldnqfycnm
vy*thr*hg*limqinhyhsyyqiwdtmygwvitrgntfsinhtrldvksrefwefsfdd
mglvrsting*ly---

---gyxxxxkxpsinqxxhl*vxmnlxxlxlxxwxxsxn*xiqnxfnxmixexlxixyxm
vmknpx*lmxkxxpxlxxlxyxlgqrmnwqtxxmxsx*xxsyxlkxnxlgtxlkxxxx*i
lxgx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK789 (AFK789Q) /CSM/AF/AFK7-D/AFK789Q.Seq.d/ 1326 0.0
VFK724 (VFK724Q) /CSM/VF/VFK7-A/VFK724Q.Seq.d/ 954 0.0
SSF723 (SSF723Q) /CSM/SS/SSF7-A/SSF723Q.Seq.d/ 954 0.0
SFK691 (SFK691Q) /CSM/SF/SFK6-D/SFK691Q.Seq.d/ 920 0.0
SFE241 (SFE241Q) /CSM/SF/SFE2-B/SFE241Q.Seq.d/ 749 0.0
CHL683 (CHL683Q) /CSM/CH/CHL6-D/CHL683Q.Seq.d/ 712 0.0
SSL833 (SSL833Q) /CSM/SS/SSL8-B/SSL833Q.Seq.d/ 38 0.24
SSG214 (SSG214Q) /CSM/SS/SSG2-A/SSG214Q.Seq.d/ 38 0.24
SSE289 (SSE289Q) /CSM/SS/SSE2-D/SSE289Q.Seq.d/ 38 0.24
SSE210 (SSE210Q) /CSM/SS/SSE2-A/SSE210Q.Seq.d/ 38 0.24

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 749 0.0 9
BX106575|BX106575.1 RZPD Homo sapiens cDNA clone IMAGp998G0283 = IMAGE:109849 5' EST. 38 0.055 2
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 48 0.26 1
CD494861|CD494861.1 CDA13-B09.y1d-s SHGC-CDA Gasterosteus aculeatus cDNA clone CDA13-B09 3', mRNA sequence. 48 0.26 1
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4. 32 0.52 2
AX347156|AX347156.1 Sequence 2227 from Patent WO0200928. 40 0.78 3
AP005208|AP005208.3 Homo sapiens genomic DNA, chromosome 18 clone:RP11-138C24, complete sequence. 36 0.87 6
AL022140|AL022140.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F1N20 (ESSA project). 40 1.3 2
AI546753|AI546753.1 BSBmL3SZ12D15SK Brugia malayi infective larva cDNA (SAW94WL-BmL3) Brugia malayi cDNA clone BSBmL3SZ12D15SK 5', mRNA sequence. 38 2.1 2
AC135363|AC135363.2 Mus musculus chromosome UNK clone RP23-341B24, WORKING DRAFT SEQUENCE, 18 unordered pieces. 42 2.5 4
dna update 2004. 8. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014297_4041(AE014297|pid:none) Drosophila melanogaster chromos... 97 3e-22
(Q5W064) RecName: Full=Lipase member J; EC=3.1.1.-; Alt... 89 3e-22
AE014134_2003(AE014134|pid:none) Drosophila melanogaster chromos... 87 5e-22
BC055815_1(BC055815|pid:none) Mus musculus lipase, family member... 87 2e-21
(Q8BM14) RecName: Full=Lipase member K; EC=3.1.1.-; Alt... 86 3e-21
(Q67ZU1) RecName: Full=Triacylglycerol lipase 2; EC=3.1... 92 8e-20
AK175707_1(AK175707|pid:none) Arabidopsis thaliana mRNA, partial... 92 8e-20
(Q9Z0M5) RecName: Full=Lysosomal acid lipase/cholesteryl ester h... 81 8e-20
(P04634) RecName: Full=Gastric triacylglycerol lipase; ... 88 1e-19
AE014296_3568(AE014296|pid:none) Drosophila melanogaster chromos... 89 2e-19
protein update 2009. 4.25
PSORT

psg: 0.85 gvh: 0.40 alm: 0.50 top: 0.37 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal

>> prediction for AFK789 is cyt

5' end seq. ID AFK789F
5' end seq.
>AFK789F.Seq
TTATTCATATAAATTTTAATATTAAAATTAAAATATGAAATTAAATTATTTAATTTCTAT
ATTATTATTTTTAATAATAAATTATTCATCATTTGTAAGTAGTATAAACATTTTTAAAGA
TATCAATATAATCTATGATCATTTAAAGGATGACATAAAAGAGATTATTGTTGATGCAAC
TACAACAGTGAATCATGTAGAATACTTTATTGATATAGTGAATAGCAATGGATACCCATG
TGAGCATCATTCAGTTATAACAGAAGATGGTTATATATTGGGTGTATTTAGAATTCCATA
TTCTTATAACAATAATCAAAATCTTAATAATAAAACTAGACAACCAATTCTATTGCAACA
TGGTTTATTAGACTCATCGATAACATGGATAGTTAATAATGCAAATCAATCACTACCATT
CATATTATCAGATATGGGATACGATGTATGGATGGGTAATAACCCGTGGTAATACATTTA
GTATCAATCATACTAGATTGGATGTAAAGAGTAGAGAATTTTGGGAATTCTCATTCGATG
ATATGGGGTTGGTACGATCTACCATCAATGGTTGATTATATCA----------
Length of 5' end seq. 583
3' end seq. ID AFK789Z
3' end seq.
>AFK789Z.Seq
----------ATGGTTATNTGGNCCNCANAAAGGNGCCTTCAATCAATCAANAANGCCAT
TTGTAAGTGGNAATGAACCTGGNGGNACTTCNCTTANAAANATGGNCCNTTTCNCNCAAT
TAGNAAATTCAAAACNATTTCAACNTTATGATTANGGAGNTATTGGNAATTTANTACNTT
ATGGTCATGAAAAACCCCCNTTAATTAATGTTNAAAANANACCCCCNACTGNAAANATTG
CNTTATTNTCTGGGACAAAGGATGAATTGGCAGACCCNANANATGNAAAGCNATTAGNAT
CNCTCTTACCNCCTGAAACNAAACNCNCTTGGGACANAATTGAAAANTANGCNCNTTTAG
ATTTTGNTTGGGCNA
Length of 3' end seq. 365
Connected seq. ID AFK789P
Connected seq.
>AFK789P.Seq
TTATTCATATAAATTTTAATATTAAAATTAAAATATGAAATTAAATTATTTAATTTCTAT
ATTATTATTTTTAATAATAAATTATTCATCATTTGTAAGTAGTATAAACATTTTTAAAGA
TATCAATATAATCTATGATCATTTAAAGGATGACATAAAAGAGATTATTGTTGATGCAAC
TACAACAGTGAATCATGTAGAATACTTTATTGATATAGTGAATAGCAATGGATACCCATG
TGAGCATCATTCAGTTATAACAGAAGATGGTTATATATTGGGTGTATTTAGAATTCCATA
TTCTTATAACAATAATCAAAATCTTAATAATAAAACTAGACAACCAATTCTATTGCAACA
TGGTTTATTAGACTCATCGATAACATGGATAGTTAATAATGCAAATCAATCACTACCATT
CATATTATCAGATATGGGATACGATGTATGGATGGGTAATAACCCGTGGTAATACATTTA
GTATCAATCATACTAGATTGGATGTAAAGAGTAGAGAATTTTGGGAATTCTCATTCGATG
ATATGGGGTTGGTACGATCTACCATCAATGGTTGATTATATCA----------ATGGTTA
TNTGGNCCNCANAAAGGNGCCTTCAATCAATCAANAANGCCATTTGTAAGTGGNAATGAA
CCTGGNGGNACTTCNCTTANAAANATGGNCCNTTTCNCNCAATTAGNAAATTCAAAACNA
TTTCAACNTTATGATTANGGAGNTATTGGNAATTTANTACNTTATGGTCATGAAAAACCC
CCNTTAATTAATGTTNAAAANANACCCCCNACTGNAAANATTGCNTTATTNTCTGGGACA
AAGGATGAATTGGCAGACCCNANANATGNAAAGCNATTAGNATCNCTCTTACCNCCTGAA
ACNAAACNCNCTTGGGACANAATTGAAAANTANGCNCNTTTAGATTTTGNTTGGGCNA
Length of connected seq. 948
Full length Seq ID -
Full length Seq. -
Length of full length seq. -