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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSC130
Library SS
(Link to library)
Clone ID SSC130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16297-1
Original site URL
Representative seq. ID SSC130Z
(Link to Original site)
Representative DNA sequence 
>SSC130 (SSC130Q) /CSM/SS/SSC1-B/SSC130Q.Seq.d/
XXXXXXXXXXTCTTTATCTTTCTTTAAAAACTTAAATCATTGTTTACAAATTGCAGTAAA
CAACATTTCGTTACAGTTAAGGGAAATAATATTCAAAAGAACAAACAAAAACAAAAACAA
CAACAGCAACAACAAATTCTTTCAAACTTGTCTCTCATGTGCTGTCTCTTTTCTTTAAAA
ACTTAAATCACAGTTTACAAATTGCAGTAAACTATATTTCGTTACAATCAAAGGAAAAAA
TGGTGCAAAGAACAAAAATAAAAAGAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAATTCTTTCAAACTTGTTTCTCGTTCGCTGTCTCTTTTCTT
TAATAACTTAAACCATAGTTTACAAATTGCAGTAAACTACATTTCGTTATAATAAAATTA
AAAAACAAATAAAAAAACAACAACTAATCAAATAAAATTAAAAAAACTATAATTATTAAT
TTAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 9.26
Translated Amino Acid sequence 
---lylslkt*iivyklq*ttfrys*gk*YSKEQTKTKTTTATTNSFKLVSHVLSLFFKN
LNHSLQIAVNYISLQSKEKMVQRTKIKRTTTTTTTTTTTTTTTTTTILSNLFLVRCLFSL
IT*tivyklq*ttfrynkikkqikkqqlik*n*knyny*fkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lylslkt*iivyklq*ttfrys*gk*YSKEQTKTKTTTATTNSFKLVSHVLSLFFKN
LNHSLQIAVNYISLQSKEKMVQRTKIKRTTTTTTTTTTTTTTTTTTILSNLFLVRCLFSL
IT*tivyklq*ttfrynkikkqikkqqlik*n*knyny*fkkkkkkkk


Frame B:
---fifl*klkslftncskqhfvtvkgnniqknkqkqkqqqqqqilsnlslmcclfslkt
*itvyklq*tifrynqrkkwckeqk*keqqqqqqqqqqqqqqqqqqffqtcfsfavsfl*
*lkp*ftncsklhfviiklknk*knnn*snkikktiiinlkkkkkkk


Frame C:
---lsffknlnhclqiavnnislqlreiifkrtnknknnnsnnkffqtclscavsfl*kl
ksqftncsklyfvtikgkngaknknkknnnnnnnnnnnnnnnnnnnsfklvsrslslffn
nlnhslqiavnyisl**n*ktnkktttnqiklkkl*lli*kkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ521 (VSJ521Q) /CSM/VS/VSJ5-A/VSJ521Q.Seq.d/                        256   3e-67
VSI138 (VSI138Q) /CSM/VS/VSI1-B/VSI138Q.Seq.d/                        256   3e-67
VSH261 (VSH261Q) /CSM/VS/VSH2-C/VSH261Q.Seq.d/                        256   3e-67
VSB240 (VSB240Q) /CSM/VS/VSB2-B/VSB240Q.Seq.d/                        256   3e-67
VSA712 (VSA712Q) /CSM/VS/VSA7-A/VSA712Q.Seq.d/                        256   3e-67
SSM140 (SSM140Q) /CSM/SS/SSM1-B/SSM140Q.Seq.d/                        256   3e-67
SSM125 (SSM125Q) /CSM/SS/SSM1-B/SSM125Q.Seq.d/                        256   3e-67
SSL534 (SSL534Q) /CSM/SS/SSL5-B/SSL534Q.Seq.d/                        256   3e-67
SSK683 (SSK683Q) /CSM/SS/SSK6-D/SSK683Q.Seq.d/                        256   3e-67
SSK650 (SSK650Q) /CSM/SS/SSK6-C/SSK650Q.Seq.d/                        256   3e-67
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC126019|AC126019.15 Medicago truncatula clone mth2-22p22, complete sequence.    36  1.1  3
AX251290|AX251290.1 Sequence 258 from Patent WO0168912.           44  1.6  1
AZ040764|AZ040764.1 RPCI-23-286F21.TV RPCI-23 Mus musculus genomic clone RPCI-23-286F21 , DNA sequence.    44  1.6  1
AC102139|AC102139.3 Mus musculus clone RP23-286F21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  1.6  1
AC139130|AC139130.3 Mus musculus chromosome 15 clone RP23-210B16 map 15, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  1.6  1
AX348594|AX348594.1 Sequence 52 from Patent WO0202807.            38  2.7  4
AX281384|AX281384.1 Sequence 48 from Patent WO0177376.            38  2.7  4
AW194698|AW194698.1 xn43a11.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE:2696444 3', mRNA sequence.    34  3.1  2
AX458458|AX458458.1 Sequence 4 from Patent WO0246454.             32  3.2  3
AX348980|AX348980.1 Sequence 438 from Patent WO0202807.           32  3.2  3
dna update 2003. 7.21
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 378,606,045
protein update 2009. 6. 9
PSORT 

 psg: 0.82  gvh: 0.36  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSC130 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSC130Z
3' end seq. 
>SSC130Z.Seq
----------TCTTTATCTTTCTTTAAAAACTTAAATCATTGTTTACAAATTGCAGTAAA
CAACATTTCGTTACAGTTAAGGGAAATAATATTCAAAAGAACAAACAAAAACAAAAACAA
CAACAGCAACAACAAATTCTTTCAAACTTGTCTCTCATGTGCTGTCTCTTTTCTTTAAAA
ACTTAAATCACAGTTTACAAATTGCAGTAAACTATATTTCGTTACAATCAAAGGAAAAAA
TGGTGCAAAGAACAAAAATAAAAAGAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAATTCTTTCAAACTTGTTTCTCGTTCGCTGTCTCTTTTCTT
TAATAACTTAAACCATAGTTTACAAATTGCAGTAAACTACATTTCGTTATAATAAAATTA
AAAAACAAATAAAAAAACAACAACTAATCAAATAAAATTAAAAAAACTATAATTATTAAT
TTAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 496
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -