>SSC416 (SSC416Q) /CSM/SS/SSC4-A/SSC416Q.Seq.d/
XXXXXXXXXXTCANGTCTGCGCAATAATATCCCAGATGTGCAGGATGATAGGTACGGTGN
CATCCTCTCGCTGAGCACTGCCGTGCATCAGCATCATGTGCATTAGAGTGGAATGTCGAA
TACATGATACATATGTAGATCGTCCACTGATATGATACGCATGAAGAGAGTATCCCCTCG
TAGATGGTCCGTATGTTTGCGGATGCTTTCNTCGCATATCAGTCTATGATACTCCCACCG
AACTGTCATACGCTTACAAATCCACATATGTTGCTTGACTGCCGCTGAAGTTTTATTATC
CAATCACGGTTTAGAATTTGCCCTATGCAAATTCACCACGTTCTATGGAAATCCATTGGT
AATTGCAGGTTGGTTAATTTGTGTTTCCCATTGGTAATATGTTTGATGCTTTTGTAATTG
AATTAATTGAATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTAT
TCATCTTTATCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGG
ATGAATTAAATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAAT
TAGATGTTGTAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATA
ACAATAATAATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAAT
CAAATTAATCAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAA

---xvcaiisqmcrmigtvxssr*alpcisimcirvecrihdtyvdrpli*ya*reyplv
dgpyvcgcfxrisvydtptelsyaykstyva*lplkfyypitv*nlpyansprsmeihw*
lqvg*FVFPIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFIFIIIAYRFKEIDQSVLD
ELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNNNSTLGNSIDYGYDHEKS
N*si*k*khfvfyikk

Frame A:
---xvcaiisqmcrmigtvxssr*alpcisimcirvecrihdtyvdrpli*ya*reyplv
dgpyvcgcfxrisvydtptelsyaykstyva*lplkfyypitv*nlpyansprsmeihw*
lqvg*FVFPIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFIFIIIAYRFKEIDQSVLD
ELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNNNSTLGNSIDYGYDHEKS
N*si*k*khfvfyikk


Frame B:
---xsaq*yprcag**vrxhplaehcrasascalewnveymihm*ivh*ydtheesips*
mvrmfadafxayqsmilppnchtltnphmlldcr*sfiiqsrfricpmqihhvlwksign
crlvnlcfplviclmll*ln*lnyqnmfyhyylvl*clysslslsllpidskklinqfwm
n*mvilq*lmimlmlipkn*ml*lkkiyhllqiqlliiitiiitqlwvivlimvmimknq
inqfknkntlyfilrk


Frame C:
---xlrnnipdvqddrygxilslstavhqhhvh*sgmsnt*yicrsstdmirmkrvsprr
wsvclrmlsshisl*yshrtvirlqihiccltaaevllsnhglefalckfttfygnplvi
agwlicvshw*yv*cfcn*in*itricfiiiiwfcnvcihlylyhycl*iqrn*sisfg*
ikw*ysnd***c*c*fqrirccnskrfiiffksny****q***lnfg**y*lwl*s*kik
linlkiktlcily*e

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC416 (SSC416Q) /CSM/SS/SSC4-A/SSC416Q.Seq.d/                       1249   0.0
SSI388 (SSI388Q) /CSM/SS/SSI3-D/SSI388Q.Seq.d/                        656   0.0
VSE439 (VSE439Q) /CSM/VS/VSE4-B/VSE439Q.Seq.d/                        654   0.0
VSE431 (VSE431Q) /CSM/VS/VSE4-B/VSE431Q.Seq.d/                        654   0.0
VFG511 (VFG511Q) /CSM/VF/VFG5-A/VFG511Q.Seq.d/                        654   0.0
VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/                        654   0.0
VFA693 (VFA693Q) /CSM/VF/VFA6-D/VFA693Q.Seq.d/                        654   0.0
SSM333 (SSM333Q) /CSM/SS/SSM3-B/SSM333Q.Seq.d/                        654   0.0
SSL179 (SSL179Q) /CSM/SS/SSL1-D/SSL179Q.Seq.d/                        654   0.0
SSL169 (SSL169Q) /CSM/SS/SSL1-C/SSL169Q.Seq.d/                        654   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   519  0.0  7
BU496155|BU496155.1 PfESToac04e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    44  0.010  2
BX255961|BX255961.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50  0.55  2
AL935299|AL935299.10 Zebrafish DNA sequence from clone DKEY-38M5.    42  0.57  7
AC020699|AC020699.6 Homo sapiens BAC clone RP11-131K17 from 4, complete sequence.    46  0.64  1
AP003843|AP003843.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1656_E11.    36  0.86  3
AC140547|AC140547.7 Medicago truncatula clone mth2-17p16, WORKING DRAFT SEQUENCE, 8 ordered pieces.    42  1.4  2
AF044015|AF044015.1 Papilio rutulus cytochrome oxidase subunit I (COI) gene, complete cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II (COII) gene, complete cds, mitochondrial genes for mitochondrial products.    34  1.8  3
AL096782|AL096782.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P8.    42  1.8  3
BX323798|BX323798.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225G5.    46  1.9  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   160   3e-38
DQ493871_1(DQ493871|pid:none) Rattus norvegicus acetyl-Coenzyme ...    33   9.8

 psg: 0.75  gvh: 0.49  alm: 0.11  top: 0.67  tms: 0.07  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSC416 is cyt

>SSC416Z.Seq
----------TCANGTCTGCGCAATAATATCCCAGATGTGCAGGATGATAGGTACGGTGN
CATCCTCTCGCTGAGCACTGCCGTGCATCAGCATCATGTGCATTAGAGTGGAATGTCGAA
TACATGATACATATGTAGATCGTCCACTGATATGATACGCATGAAGAGAGTATCCCCTCG
TAGATGGTCCGTATGTTTGCGGATGCTTTCNTCGCATATCAGTCTATGATACTCCCACCG
AACTGTCATACGCTTACAAATCCACATATGTTGCTTGACTGCCGCTGAAGTTTTATTATC
CAATCACGGTTTAGAATTTGCCCTATGCAAATTCACCACGTTCTATGGAAATCCATTGGT
AATTGCAGGTTGGTTAATTTGTGTTTCCCATTGGTAATATGTTTGATGCTTTTGTAATTG
AATTAATTGAATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTAT
TCATCTTTATCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGG
ATGAATTAAATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAAT
TAGATGTTGTAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATA
ACAATAATAATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAAT
CAAATTAATCAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAA