>SSC888 (SSC888Q) /CSM/SS/SSC8-D/SSC888Q.Seq.d/
XXXXXXXXXXAATAATAATAATAATAATAACAATAGTAATAGTATTAATAATTCCAATAA
TGCCCATAGTATATATCCAAATGGTAGTAATAGTGGAAATTCAAAAAATTCATCATCATC
ATCATCATCATCATCATCAAACAATGGAAATTGTTCATCAAATTATCCATCACCACCATT
ATCTGAAAATCATTTATCATTATCATTGCCATCAATTTCAAAATCTCATAGTAATAATAC
TGGTAGTTTTGGATTTAGTTTATCAAGTCCTACTACCTCTAGTAGTAACAATAGCAGCAA
TAACAACAACAACAACAACAATAGTAATCAATTCTTTTCATCAATTTCTGATCAACAACC
TTCTAAAAAATTACATGTTGTATCACCACCATTACAATCATTACAATCAATTCAACCACC
AATTTCACAACTTAATAATAATAATAATAATCACCACAATAATCACCACCAAAATCATCA
CCATCAAAATCACAATCATCAACATCATTCAAAAAAAAGAAAAATTAGATCCTATGATTC
AAAACACTTGGAAAAATTCCAGGTAATTAGAGAGAAAGTTATTGAAACACTTTCTGAAAT
TGATGATATAATCAATTCAATGAAAAATGATTCCGATAATGATAATAGTGAATTCGAGGA
TTGTTAAATAATCCTTCCCACTTAACAAATAAAAAAAA

---NNNNNNNSNSINNSNNAHSIYPNGSNSGNSKNSSSSSSSSSSNNGNCSSNYPSPPLS
ENHLSLSLPSISKSHSNNTGSFGFSLSSPTTSSSNNSSNNNNNNNNSNQFFSSISDQQPS
KKLHVVSPPLQSLQSIQPPISQLNNNNNNHHNNHHQNHHHQNHNHQHHSKKRKIRSYDSK
HLEKFQVIREKVIETLSEIDDIINSMKNDSDNDNSEFEDC*iilpt*qikk

Frame A:
---iiiiiitivivliipimpivyiqmvviveiqkihhhhhhhhhqtmeivhqiihhhhy
lkiiyhyhchqfqnliviilvvldlvyqvllplvvtiaaittttttivinsfhqflinnl
lknymlyhhhynhynqfnhqfhnliiiiiittiittkiitikitiiniiqkkekldpmiq
ntwknsr*lerkllkhflklmi*siq*kmipimiivnsrivk*sfplnk*kk


Frame B:
---******q***y**fq*cp*yiskw***wkfkkfiiiiiiiiikqwklfiklsittii
*ksfiiiiainfkis***yw*fwi*fiksyyl***q*qq*qqqqqq**silfinf*sttf
*kitccittitiitinsttnftt******spq*sppksspsksqsstsfkkkkn*il*fk
tlgkipgn*resy*ntf*n**ynqfnek*fr*****irgllnnpshltnkk


Frame C:
---NNNNNNNSNSINNSNNAHSIYPNGSNSGNSKNSSSSSSSSSSNNGNCSSNYPSPPLS
ENHLSLSLPSISKSHSNNTGSFGFSLSSPTTSSSNNSSNNNNNNNNSNQFFSSISDQQPS
KKLHVVSPPLQSLQSIQPPISQLNNNNNNHHNNHHQNHHHQNHNHQHHSKKRKIRSYDSK
HLEKFQVIREKVIETLSEIDDIINSMKNDSDNDNSEFEDC*iilpt*qikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI452 (SSI452Q) /CSM/SS/SSI4-C/SSI452Q.Seq.d/                        329   3e-89
SSC888 (SSC888Q) /CSM/SS/SSC8-D/SSC888Q.Seq.d/                        329   3e-89
SSB415 (SSB415Q) /CSM/SS/SSB4-A/SSB415Q.Seq.d/                        329   3e-89
SSB412 (SSB412Q) /CSM/SS/SSB4-A/SSB412Q.Seq.d/                        329   3e-89
CHJ104 (CHJ104Q) /CSM/CH/CHJ1-A/CHJ104Q.Seq.d/                        321   8e-87
SSG119 (SSG119Q) /CSM/SS/SSG1-A/SSG119Q.Seq.d/                        240   2e-62
SFJ211 (SFJ211Q) /CSM/SF/SFJ2-A/SFJ211Q.Seq.d/                         46   7e-04
SFI684 (SFI684Q) /CSM/SF/SFI6-D/SFI684Q.Seq.d/                         46   7e-04
CFH507 (CFH507Q) /CSM/CF/CFH5-A/CFH507Q.Seq.d/                         46   7e-04
SSI522 (SSI522Q) /CSM/SS/SSI5-A/SSI522Q.Seq.d/                         40   0.044

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L38454|L38454.1 Plasmodium falciparum (clone pS31H) ORF mRNA, 3' end of cds.    50  0.037  1
AR089154|AR089154.1 Sequence 7 from patent US 5993827.            50  0.037  1
AR064707|AR064707.1 Sequence 7 from patent US 5849306.            50  0.037  1
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42  0.12  8
BX324109|BX324109.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212E4.    48  0.15  1
AC020773|AC020773.3 Homo sapiens clone RP11-713N20, WORKING DRAFT SEQUENCE, 25 unordered pieces.    46  0.58  1
AL139340|AL139340.12 Human DNA sequence from clone RP11-7F3 on chromosome 10.    38  1.5  5
BD092717|BD092717.1 Identification of polynucleotides encoding novel helicobacter polypeptides in the helicobacter genome.    44  2.3  1
AG242421|AG242421.1 Lotus corniculatus var. japonicus DNA, clone:LjT10l05_not.    44  2.3  1
CC564953|CC564953.1 CH240_476B6.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_476B6, genomic survey sequence.    44  2.3  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 377,756,553

 psg: 0.73  gvh: 0.35  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.28
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSC888 is mit

>SSC888Z.Seq
----------AATAATAATAATAATAATAACAATAGTAATAGTATTAATAATTCCAATAA
TGCCCATAGTATATATCCAAATGGTAGTAATAGTGGAAATTCAAAAAATTCATCATCATC
ATCATCATCATCATCATCAAACAATGGAAATTGTTCATCAAATTATCCATCACCACCATT
ATCTGAAAATCATTTATCATTATCATTGCCATCAATTTCAAAATCTCATAGTAATAATAC
TGGTAGTTTTGGATTTAGTTTATCAAGTCCTACTACCTCTAGTAGTAACAATAGCAGCAA
TAACAACAACAACAACAACAATAGTAATCAATTCTTTTCATCAATTTCTGATCAACAACC
TTCTAAAAAATTACATGTTGTATCACCACCATTACAATCATTACAATCAATTCAACCACC
AATTTCACAACTTAATAATAATAATAATAATCACCACAATAATCACCACCAAAATCATCA
CCATCAAAATCACAATCATCAACATCATTCAAAAAAAAGAAAAATTAGATCCTATGATTC
AAAACACTTGGAAAAATTCCAGGTAATTAGAGAGAAAGTTATTGAAACACTTTCTGAAAT
TGATGATATAATCAATTCAATGAAAAATGATTCCGATAATGATAATAGTGAATTCGAGGA
TTGTTAAATAATCCTTCCCACTTAACAAATAAAAAAAA