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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD269
Library SS
(Link to library)
Clone ID SSD269
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04831-1
Original site URL
Representative seq. ID SSD269E
(Link to Original site)
Representative DNA sequence 
>SSD269 (SSD269Q) /CSM/SS/SSD2-C/SSD269Q.Seq.d/
AATTAATAATAATAATAATGAAAAAAAAACAATTTATTCATTAGTTGGAATTGAAGAAGC
ACCAGAACATTTAAAAAGAGAATTTATATTGAATGGATATAGGGTAGATTTTTCATATTT
ATTATGTTTTAAATCAGTGTTGATATTTGGACATAACGATTTCGCTAATATACATAGTCA
TTTAATACCGGCATTGTTTTTTATGTATACATTGTGGGGAGTGTTGACAGGATCGAGTGG
AGGTTATAACGATTATGCAACTTTTGATAGCGGTGACAAGATAGTGTTCACCATATTCAG
GCAGCCATCACCACCTACATCCTGTCGTTCCTATATCATACGTTTGGGTGCCACTCATTA
TGTACCTATTCGAAATTGTTGGTATGTGATTATTTGGGAATCATCCTATTGATAGGGTCT
AGTTTTTTTCCACCACTTTATTATTCGTTCAAGGCGAATCATATCGGGTTAATGATATTT
TATATGGNTTCAATTACAATGTTGTGTTTGTTATTGGCAATCATGGTTTTAATACCATCG
TTGGCCGATAAGAATACTCTAAGAAATACTTTATTCTGTTTAACGGCTTTGTTTGGTATT
GTGCCTTCAATTCACACACTTTTCATTTACCTTACCCAGCCCAAGAGGTGTATTACTTTA
TATTCCGTTTGGTTTGTATGTTTTTAATTTATGGTGCTGGTTTATTAGTTTACATCTATA
GAATTCCTGAAAGTTTAATACCTGGTTATTTCGATTCAATTGTAANAAGTCATTCAGTTT
GGCATTTCTTTACTGCTTATGCTACTTTTTTTAGTTTAAATACTTATTTAGAATTATATA
GTAAAATTTCAAATCTATAAAATAAATAAATAAATATATAAAAATAAAAAATAAAAATAA
ATAAAAATAAATAAATAAATAAATAAATAATAATGTTCCTTATTTGGAAAT
sequence update 1999. 4. 5
Translated Amino Acid sequence 
n******kknnlfiswn*rstrtfkkriyiewi*grffifimf*isvdiwt*rfr*yt*s
fntgivfyvyivgsvdriewrl*rlcnf**r*QDSVHHIQAAITTYILSFLYHTFGCHSL
CTYSKLLVCDYLGIILLIGSSFFPPLYYSFKANHIGLMIFYMXSITMLCLLLAIMVLIPS
LADKNTLRNTLFCLTALFGIVPSIHTLFIYLTQPKRCITLYSVWFVCF*fmvlvy*ftsi
eflkv*ylvisiql*xviqfgislllmllflv*ili*nyivkfqiykink*iyknkk*k*
ikink*ink**cslfgn
Translated Amino Acid sequence (All Frames) 
Frame A:
n******kknnlfiswn*rstrtfkkriyiewi*grffifimf*isvdiwt*rfr*yt*s
fntgivfyvyivgsvdriewrl*rlcnf**r*QDSVHHIQAAITTYILSFLYHTFGCHSL
CTYSKLLVCDYLGIILLIGSSFFPPLYYSFKANHIGLMIFYMXSITMLCLLLAIMVLIPS
LADKNTLRNTLFCLTALFGIVPSIHTLFIYLTQPKRCITLYSVWFVCF*fmvlvy*ftsi
eflkv*ylvisiql*xviqfgislllmllflv*ili*nyivkfqiykink*iyknkk*k*
ikink*ink**cslfgn


Frame B:
innnnnekktiyslvgieeapehlkrefilngyrvdfsyllcfksvlifghndfanihsh
lipalffmytlwgvltgssggyndyatfdsgdkivftifrqpspptscrsyiirlgathy
vpirncwyviiwessy**glvffhhfiirsrriisg**yfiwxqlqccvcywqswf*yhr
wpiril*eilysv*rlclvlclqfthfsftlpsprgvllyipfglyvfnlwcwfislhl*
ns*kfntwlfrfncxksfslaflyclcyff*fkylfrii**nfksik*inkyikiknknk
*k*ink*innnvpyle


Frame C:
liiiimkkkqfih*lelkkhqni*kenly*mdig*ifhiyyvlnqc*ylditisliyivi
*yrhcflcihcgec*qdrvevitimqlliavtr*cspysgshhhlhpvvpisyvwvplim
ylfeivgm*lfgnhpidrv*ffsttllfvqgesyrvndilygfnynvvfvignhgfntiv
gr*eyskkyfilfngfvwycafnshtfhlpypaqevyyfifrlvcmfliygagllvyiyr
ipeslipgyfdsivxshsvwhfftayatffslntylelyskisnl*nk*ini*k*kikin
knk*ink*iimfliwk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD269 (SSD269Q) /CSM/SS/SSD2-C/SSD269Q.Seq.d/                       1548   0.0
SSI138 (SSI138Q) /CSM/SS/SSI1-B/SSI138Q.Seq.d/                         40   0.061
SSH589 (SSH589Q) /CSM/SS/SSH5-D/SSH589Q.Seq.d/                         40   0.061
SSG588 (SSG588Q) /CSM/SS/SSG5-D/SSG588Q.Seq.d/                         40   0.061
VHL874 (VHL874Q) /CSM/VH/VHL8-D/VHL874Q.Seq.d/                         38   0.24
VSK494 (VSK494Q) /CSM/VS/VSK4-D/VSK494Q.Seq.d/                         38   0.24
VSK391 (VSK391Q) /CSM/VS/VSK3-D/VSK391Q.Seq.d/                         38   0.24
VSK379 (VSK379Q) /CSM/VS/VSK3-D/VSK379Q.Seq.d/                         38   0.24
VSJ187 (VSJ187Q) /CSM/VS/VSJ1-D/VSJ187Q.Seq.d/                         38   0.24
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC110242|AC110242.4 Mus musculus clone RP23-238L21, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  0.031  5
AX344575|AX344575.1 Sequence 26 from Patent WO0200932.            36  0.100  5
BX248496|BX248496.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-236J4.    36  0.13  4
AC127169|AC127169.12 Medicago truncatula clone mth2-36n3, complete sequence.    44  0.15  3
BX157516|BX157516.1 Danio rerio genomic clone DKEY-146D7, genomic survey sequence.    36  0.15  3
BX510932|BX510932.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36  0.22  5
AC102266|AC102266.3 Mus musculus clone RP24-245H21, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  0.22  3
AX392733|AX392733.1 Sequence 23 from Patent WO0212526.            40  0.24  4
AL845507|AL845507.8 Zebrafish DNA sequence from clone CH211-196F15.    40  0.24  3
BH769271|BH769271.1 BMBAC364H01SP6_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence.    38  0.24  3
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC096792_1(BC096792|pid:none) Danio rerio progestin and adipoQ r...    55   1e-17
AM502254_601(AM502254|pid:none) Leishmania infantum chromosome 36.     48   3e-16
AC144540_14(AC144540|pid:none) Medicago truncatula clone mth2-19...    72   4e-16
AM269950_16(AM269950|pid:none) Aspergillus niger contig An01c003...    46   5e-16
EF026033_1(EF026033|pid:none) Lilium longiflorum clone LLP-82 he...    62   4e-15
AF360173_1(AF360173|pid:none) Arabidopsis thaliana unknown prote...    60   2e-14
AK072709_1(AK072709|pid:none) Oryza sativa Japonica Group cDNA c...    60   3e-14
AK176182_1(AK176182|pid:none) Arabidopsis thaliana mRNA for puta...    61   4e-14
AB362836_1(AB362836|pid:none) Macaca fuscata AdipoR2 mRNA for ad...    52   5e-14
(Q86V24) RecName: Full=Adiponectin receptor protein 2; AltName: ...    51   9e-14
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.58  alm: 0.18  top: 0.60  tms: 0.20  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSD269 is end
5' end seq. ID SSD269F
5' end seq. 
>SSD269F.Seq
AATTAATAATAATAATAATGAAAAAAAAACAATTTATTCATTAGTTGGAATTGAAGAAGC
ACCAGAACATTTAAAAAGAGAATTTATATTGAATGGATATAGGGTAGATTTTTCATATTT
ATTATGTTTTAAATCAGTGTTGATATTTGGACATAACGATTTCGCTAATATACATAGTCA
TTTAATACCGGCATTGTTTTTTATGTATACATTGTGGGGAGTGTTGACAGGATCGAGTGG
AGGTTATAACGATTATGCAACTTTTGATAGCGGTGACAAGATAGTGTTCACCATATTCAT
TGGGGCAGCCATCACCACCTACATCCTGTCGTTCCTATATCATACGTTTGGGTGCCACTC
ATTATGTACCTATTCGAAATTGTTGGTATGTGATTATTTGGGAATCATCCTATTGATAGG
GTCTAGTTTTTTTCCACCACTTTATTATTCGTTCAAGGCGAATCATATCGGGTTAATGAT
ATTTTATATGGGTTCAATTACAATGTTGTGTTTGTTATTGGCAATCATGGTTTTAATACC
ATCGTTGGCCGATAAGAATACTCTAAGAAATACTTTATTCTGTTTAACGGCTTTGTTTGG
TATTGTGCCTTCAATTCACACACTTTTCATTTACC----------
Length of 5' end seq. 635
3' end seq. ID SSD269Z
3' end seq. 
>SSD269Z.Seq
----------GGCAGCCATCACCACCTACATCCTGTCGTTCCTATATCATACGTTTGGGT
GCCACTCATTATGTACCTATTCGAAATTGTTGGTATGTGATTATTTGGGAATCATCCTAT
TGATAGGGTCTAGTTTTTTTCCACCACTTTATTATTCGTTCAAGGCGAATCATATCGGGT
TAATGATATTTTATATGGATTCAATTACAATGTTGTGTTTGTTATTGGCAATCATGGTTT
TAATACCATCGTTGGCCGATAAGAATACTCTAAGAAATACTTTATTCTGTTTAACGGCTT
TGTTTGGTATTGTGCCTTCAATTCACACACTTTTCATTTACCCAGCCCAAGAGGTGTATT
ACTTTATATTCCGTTTGGTTTGTATGTTTTTAATTTATGGTGCTGGTTTATTAGTTTACA
TCTATAGAATTCCTGAAAGTTTAATACCTGGTTATTTCGATTCAATTGTAANAAGTCATT
CAGTTTGGCATTTCTTTACTGCTTATGCTACTTTTTTTAGTTTAAATACTTATTTAGAAT
TATATAGTAAAATTTCAAATCTATAAAATAAATAAATAAATATATAAAAATAAAAAATAA
AAATAAATAAAAATAAATAAATAAATAAATAAATAATAATGTTCCTTATTTGGAAATAAT
AAAAAAA
Length of 3' end seq. 657
Connected seq. ID SSD269P
Connected seq. 
>SSD269P.Seq
AATTAATAATAATAATAATGAAAAAAAAACAATTTATTCATTAGTTGGAATTGAAGAAGC
ACCAGAACATTTAAAAAGAGAATTTATATTGAATGGATATAGGGTAGATTTTTCATATTT
ATTATGTTTTAAATCAGTGTTGATATTTGGACATAACGATTTCGCTAATATACATAGTCA
TTTAATACCGGCATTGTTTTTTATGTATACATTGTGGGGAGTGTTGACAGGATCGAGTGG
AGGTTATAACGATTATGCAACTTTTGATAGCGGTGACAAGATAGTGTTCACCATATTCAT
TGGGGCAGCCATCACCACCTACATCCTGTCGTTCCTATATCATACGTTTGGGTGCCACTC
ATTATGTACCTATTCGAAATTGTTGGTATGTGATTATTTGGGAATCATCCTATTGATAGG
GTCTAGTTTTTTTCCACCACTTTATTATTCGTTCAAGGCGAATCATATCGGGTTAATGAT
ATTTTATATGGGTTCAATTACAATGTTGTGTTTGTTATTGGCAATCATGGTTTTAATACC
ATCGTTGGCCGATAAGAATACTCTAAGAAATACTTTATTCTGTTTAACGGCTTTGTTTGG
TATTGTGCCTTCAATTCACACACTTTTCATTTACC----------GGCAGCCATCACCAC
CTACATCCTGTCGTTCCTATATCATACGTTTGGGTGCCACTCATTATGTACCTATTCGAA
ATTGTTGGTATGTGATTATTTGGGAATCATCCTATTGATAGGGTCTAGTTTTTTTCCACC
ACTTTATTATTCGTTCAAGGCGAATCATATCGGGTTAATGATATTTTATATGGATTCAAT
TACAATGTTGTGTTTGTTATTGGCAATCATGGTTTTAATACCATCGTTGGCCGATAAGAA
TACTCTAAGAAATACTTTATTCTGTTTAACGGCTTTGTTTGGTATTGTGCCTTCAATTCA
CACACTTTTCATTTACCCAGCCCAAGAGGTGTATTACTTTATATTCCGTTTGGTTTGTAT
GTTTTTAATTTATGGTGCTGGTTTATTAGTTTACATCTATAGAATTCCTGAAAGTTTAAT
ACCTGGTTATTTCGATTCAATTGTAANAAGTCATTCAGTTTGGCATTTCTTTACTGCTTA
TGCTACTTTTTTTAGTTTAAATACTTATTTAGAATTATATAGTAAAATTTCAAATCTATA
AAATAAATAAATAAATATATAAAAATAAAAAATAAAAATAAATAAAAATAAATAAATAAA
TAAATAAATAATAATGTTCCTTATTTGGAAATAATAAAAAAA
Length of connected seq. 1292
Full length Seq ID SSD269E
Full length Seq. 
>SSD269E.Seq
AATTAATAATAATAATAATGAAAAAAAAACAATTTATTCATTAGTTGGAATTGAAGAAGC
ACCAGAACATTTAAAAAGAGAATTTATATTGAATGGATATAGGGTAGATTTTTCATATTT
ATTATGTTTTAAATCAGTGTTGATATTTGGACATAACGATTTCGCTAATATACATAGTCA
TTTAATACCGGCATTGTTTTTTATGTATACATTGTGGGGAGTGTTGACAGGATCGAGTGG
AGGTTATAACGATTATGCAACTTTTGATAGCGGTGACAAGATAGTGTTCACCATATTCAG
GCAGCCATCACCACCTACATCCTGTCGTTCCTATATCATACGTTTGGGTGCCACTCATTA
TGTACCTATTCGAAATTGTTGGTATGTGATTATTTGGGAATCATCCTATTGATAGGGTCT
AGTTTTTTTCCACCACTTTATTATTCGTTCAAGGCGAATCATATCGGGTTAATGATATTT
TATATGGNTTCAATTACAATGTTGTGTTTGTTATTGGCAATCATGGTTTTAATACCATCG
TTGGCCGATAAGAATACTCTAAGAAATACTTTATTCTGTTTAACGGCTTTGTTTGGTATT
GTGCCTTCAATTCACACACTTTTCATTTACCTTACCCAGCCCAAGAGGTGTATTACTTTA
TATTCCGTTTGGTTTGTATGTTTTTAATTTATGGTGCTGGTTTATTAGTTTACATCTATA
GAATTCCTGAAAGTTTAATACCTGGTTATTTCGATTCAATTGTAANAAGTCATTCAGTTT
GGCATTTCTTTACTGCTTATGCTACTTTTTTTAGTTTAAATACTTATTTAGAATTATATA
GTAAAATTTCAAATCTATAAAATAAATAAATAAATATATAAAAATAAAAAATAAAAATAA
ATAAAAATAAATAAATAAATAAATAAATAATAATGTTCCTTATTTGGAAAT
Length of full length seq. 951