>SSD323 (SSD323Q) /CSM/SS/SSD3-A/SSD323Q.Seq.d/
ATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTT
AAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTA
AATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAA
AAAAAAAAAGAAAAAAAGATTTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAG
ATGTAATGGTAAACCCAAAGTAGAATGGAATTCCAAAAAAAGTTCTTTATAAXXXXXXXX
XX

itflcnslkcissl*QKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKK
KKKEKKILKKKKKIEKKKLKM*w*tqsrmefqkkffi---

Frame A:
itflcnslkcissl*QKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKK
KKKEKKILKKKKKIEKKKLKM*w*tqsrmefqkkffi---


Frame B:
shsyatlsnv*avfnkkkylkkkkkekkkilkyff*nqf*i*iimffffl*kkerkkekk
kkkkkrf*kkkkk*kkks*rcngkpkvewnskkssl---


Frame C:
hipmqlsqmykqsltkkni*kkkkkkkkky*niffkinfkyk**cffffykkkkekkkkk
kkrkkdfkkkkknrkkkvkdvmvnpk*ngipkkvly---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                         94   1e-18
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                         94   1e-18
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                         94   1e-18
SSM514 (SSM514Q) /CSM/SS/SSM5-A/SSM514Q.Seq.d/                         94   1e-18
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                         94   1e-18
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                         94   1e-18
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                         94   1e-18
SSM326 (SSM326Q) /CSM/SS/SSM3-B/SSM326Q.Seq.d/                         94   1e-18
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                         94   1e-18
SSM222 (SSM222Q) /CSM/SS/SSM2-A/SSM222Q.Seq.d/                         94   1e-18

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                     94   1e-48  3
AX599046|AX599046.1 Sequence 386 from Patent WO02077272.           34   2e-05  6
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  38   3e-05  9
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.    34   8e-05  6
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   3e-04  7
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56   3e-04  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    40   3e-04  5
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    34   3e-04  6
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34   4e-04  7
AC011459|AC011459.5 Homo sapiens chromosome 19 clone CTC-416D1, complete sequence.    46   7e-04  5

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 151,831,552

 psg: 0.44  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.08
 nuc: 1.95  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSD323 is nuc

>SSD323F.Seq
ATCACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTT
AAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTA
AATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAA
AAAAAAAAAGAAAAAAAGATTTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAG
ATGTAATGGTAAACCCAAAGTAGAATGGAATTCCAAAAAAAGTTCTTTATAA--------
--