>AFL187 (AFL187Q) /CSM/AF/AFL1-D/AFL187Q.Seq.d/
XXXXXXXXXXTTTTATCAAGATCAACAAAATTCAAAATACTATCAAGATAATTGTGTAAA
CATCTCATGCGATCAAGAACAAGAAATTCTAAATAGTTGTTTATCATCTTCAAAGAAATC
AAATTCAAGAAAAAAGAATACAACCAACGCCAACATCACCGCCAACACTAATGAAGATAA
TGAACTATTTTCAAAATTAAAAAAGAATTTAAGACCTTTCTTTAAGAAATCATTTTTATT
GGATAGTTTATTCACTCAAGAGACAGAGAAAGAGATTTTATCATTCATCAGAGGTGATGA
TTGCTTTTATAGAAATACTCCATCCAATACAATGGAGTTTAATCAAGAGAACCCAGCAAA
GAGATTAATTATCCATGGTTTAGCCTCTTACTATTCATTACAAAGTAGAAGTCATACCAA
CAATAATGGTAAACGTATTCTTGTCCTTAGAAAACAAAAATCAATGCCACCTCTTCCTGA
ACAAACAATCGTTCAATATTTAATCTCTGAATCAAAGAAACAAGCTATCCAGGTTCATCA
AGTTCAAAGAAAAAAAGTTATTAAAAAATCNCAATCNATTTATATTAAAAAAAGAG

---YQDQQNSKYYQDNCVNISCDQEQEILNSCLSSSKKSNSRKKNTTNANITANTNEDNE
LFSKLKKNLRPFFKKSFLLDSLFTQETEKEILSFIRGDDCFYRNTPSNTMEFNQENPAKR
LIIHGLASYYSLQSRSHTNNNGKRILVLRKQKSMPPLPEQTIVQYLISESKKQAIQVHQV
QRKKVIKKSQSIYIKKR

Frame A:
---fikinkiqntikiiv*tshaiknkkf*ivvyhlqrnqiqekriqptptspptlmkim
nyfqn*kri*dlslrnhfywivyslkrqrkrfyhssevmiafieilhpiqwslikrtqqr
d*lsmv*pltihykveviptimvnvflslenknqchlflnkqsfni*slnqrnklsrfik
fkekkllknxnxfilkke


Frame B:
---lsrstkfkilsr*lckhlmrsrtrnsk*lfiifkeikfkkkeynqrqhhrqh**r**
tifkikkefktfl*eiifig*fihsrdrerdfiihqr**lll*kysiqyngv*srepske
inypwfslllfitk*ksyqq*w*tyscp*ktkinatss*tnnrsifnl*iketsypgsss
skkksy*kixixly*kk


Frame C:
---YQDQQNSKYYQDNCVNISCDQEQEILNSCLSSSKKSNSRKKNTTNANITANTNEDNE
LFSKLKKNLRPFFKKSFLLDSLFTQETEKEILSFIRGDDCFYRNTPSNTMEFNQENPAKR
LIIHGLASYYSLQSRSHTNNNGKRILVLRKQKSMPPLPEQTIVQYLISESKKQAIQVHQV
QRKKVIKKSQSIYIKKR

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL187 (AFL187Q) /CSM/AF/AFL1-D/AFL187Q.Seq.d/                       1059   0.0
AFE795 (AFE795Q) /CSM/AF/AFE7-D/AFE795Q.Seq.d/                       1059   0.0
AFM404 (AFM404Q) /CSM/AF/AFM4-A/AFM404Q.Seq.d/                       1049   0.0
AHE359 (AHE359Q) /CSM/AH/AHE3-C/AHE359Q.Seq.d/                       1047   0.0
CFG674 (CFG674Q) /CSM/CF/CFG6-D/CFG674Q.Seq.d/                       1031   0.0
SFH293 (SFH293Q) /CSM/SF/SFH2-D/SFH293Q.Seq.d/                       1005   0.0
SSE890 (SSE890Q) /CSM/SS/SSE8-D/SSE890Q.Seq.d/                        458   e-128
SSL173 (SSL173Q) /CSM/SS/SSL1-D/SSL173Q.Seq.d/                        331   7e-90
SFG362 (SFG362Q) /CSM/SF/SFG3-C/SFG362Q.Seq.d/                        295   4e-79
CHA385 (CHA385Q) /CSM/CH/CHA3-D/CHA385Q.Seq.d/                        283   1e-75

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC097017|AC097017.6 Rattus norvegicus clone CH230-2L17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   3e-05  8
AC120680|AC120680.5 Rattus norvegicus clone CH230-40I19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   3e-04  10
AC109060|AC109060.4 Rattus norvegicus clone CH230-95O6, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   0.001  5
AC128188|AC128188.3 Rattus norvegicus clone CH230-432N21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   0.002  5
AC133112|AC133112.2 Rattus norvegicus clone CH230-1O14, WORKING DRAFT SEQUENCE, 1 ordered piece.    40   0.003  8
AC110230|AC110230.12 Mus musculus chromosome 6, clone RP23-54L18, complete sequence.    34   0.003  7
AC126560|AC126560.3 Rattus norvegicus clone CH230-4M9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42   0.005  5
AC016150|AC016150.19 Homo sapiens chromosome X clone RP11-503D9, WORKING DRAFT SEQUENCE, 25 unordered pieces.    34   0.005  11
AC105879|AC105879.3 Rattus norvegicus clone CH230-72E12, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    34   0.005  10
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   0.007  10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC080131_58(AC080131|pid:none) Trypanosoma brucei chromosome 4 c...    42   0.009
AC146865_13(AC146865|pid:none) Medicago truncatula clone mth2-36...    40   0.035
AL133109_1(AL133109|pid:none) Homo sapiens mRNA; cDNA DKFZp566N1...    38   0.23
BC036399_1(BC036399|pid:none) Homo sapiens cyclic AMP-regulated ...    38   0.23
AK294484_1(AK294484|pid:none) Homo sapiens cDNA FLJ61232 complet...    38   0.23
BC053001_1(BC053001|pid:none) Mus musculus cyclic AMP-regulated ...    37   0.39
AK032543_1(AK032543|pid:none) Mus musculus adult male olfactory ...    37   0.39
AK032417_1(AK032417|pid:none) Mus musculus adult male olfactory ...    37   0.39
(Q8C0Y6) RecName: Full=cAMP-regulated phosphoprotein 21;        ...    37   0.39
(Q6YXP4) RecName: Full=Light-independent protochlorophyllide red...    33   5.6

 psg: 0.55  gvh: 0.47  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for AFL187 is nuc

>AFL187Z.Seq
----------TTTTATCAAGATCAACAAAATTCAAAATACTATCAAGATAATTGTGTAAA
CATCTCATGCGATCAAGAACAAGAAATTCTAAATAGTTGTTTATCATCTTCAAAGAAATC
AAATTCAAGAAAAAAGAATACAACCAACGCCAACATCACCGCCAACACTAATGAAGATAA
TGAACTATTTTCAAAATTAAAAAAGAATTTAAGACCTTTCTTTAAGAAATCATTTTTATT
GGATAGTTTATTCACTCAAGAGACAGAGAAAGAGATTTTATCATTCATCAGAGGTGATGA
TTGCTTTTATAGAAATACTCCATCCAATACAATGGAGTTTAATCAAGAGAACCCAGCAAA
GAGATTAATTATCCATGGTTTAGCCTCTTACTATTCATTACAAAGTAGAAGTCATACCAA
CAATAATGGTAAACGTATTCTTGTCCTTAGAAAACAAAAATCAATGCCACCTCTTCCTGA
ACAAACAATCGTTCAATATTTAATCTCTGAATCAAAGAAACAAGCTATCCAGGTTCATCA
AGTTCAAAGAAAAAAAGTTATTAAAAAATCNCAATCNATTTATATTAAAAAAAGAG