>SSE593 (SSE593Q) /CSM/SS/SSE5-D/SSE593Q.Seq.d/
XXXXXXXXXXGTAAATATAAATTAAAAAAATGAAATTCCAACATACATTTATGCATTATT
ATCACTATTAACATATGCAAATGCATATGATTATTTCACAACAACATTGGCCAATCAAAA
TCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATT
TGTCCGTTACATTCCTGATGCTACCAATACAAATCAATTCACTTTTGCCGAATATACTAC
AAACCAATGTACTGTTCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGATCA
AACTTCTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACC
CGCACCAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAACACC
AACAAATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAAC
TGTTGTTGCAAGTTTATCACTCATTATATTCTCAATGATTCTTTCCCTTTGTTAATTTTA
AAAATAACAAATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAA
AAAAATAAAATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAATAAAATTAAAAC
TTTTTTAATTTAAAAATAAA

---nin*KNEIPTYIYALLSLLTYANAYDYFTTTLANQNPVCASVDVIQNVCTEVCGRFV
RYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGSDWSGVCKITATPA
PTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVASLSLIIFSMILSLC*f*k
*qmvkiiwhfqvqf*ifqkkiklnk*lnklinkknkiktfli*k*

Frame A:
---*i*ikkmkfqhtfmhyyhy*hmqmhmiisqqhwpikiqfvlq*msykmfvlrfvvdl
svtflmlpiqinsllpnilqtnvlfk*hql*qihllalikllhmhsvligvefvkslphp
hqqlhqqlhqqlhqq*hqhqqihqiqphpkhqqqlvllqlllqvyhslysq*ffpfvnfk
nnkw*klfgifkynfkffkkk*n*inn*in*likkiklklf*fknk


Frame B:
---kyklkk*nsnihlciiitinickci*lfhnnigqsksslcfsrchtkcly*glw*ic
plhs*cyqyksihfcriyykpmycssntscnkyiylr*snfftctrf*lewsl*nhchtr
tnsytnsytnsytnsntntnkytksnpipninnnwfcfnccckfithyilndsfpllilk
itngknylafsstilnfskknkik*iik*in**kk*n*nffnlki


Frame C:
---nin*KNEIPTYIYALLSLLTYANAYDYFTTTLANQNPVCASVDVIQNVCTEVCGRFV
RYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGSDWSGVCKITATPA
PTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSASTVVASLSLIIFSMILSLC*f*k
*qmvkiiwhfqvqf*ifqkkiklnk*lnklinkknkiktfli*k*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE593 (SSE593Q) /CSM/SS/SSE5-D/SSE593Q.Seq.d/                       1090   0.0
SSJ770 (SSJ770Q) /CSM/SS/SSJ7-C/SSJ770Q.Seq.d/                       1068   0.0
SSI240 (SSI240Q) /CSM/SS/SSI2-B/SSI240Q.Seq.d/                       1068   0.0
SSC554 (SSC554Q) /CSM/SS/SSC5-C/SSC554Q.Seq.d/                       1068   0.0
SSJ671 (SSJ671Q) /CSM/SS/SSJ6-C/SSJ671Q.Seq.d/                       1061   0.0
SSD348 (SSD348Q) /CSM/SS/SSD3-B/SSD348Q.Seq.d/                       1061   0.0
SLC402 (SLC402Q) /CSM/SL/SLC4-A/SLC402Q.Seq.d/                       1057   0.0
SSG142 (SSG142Q) /CSM/SS/SSG1-B/SSG142Q.Seq.d/                       1053   0.0
SHH724 (SHH724Q) /CSM/SH/SHH7-A/SHH724Q.Seq.d/                       1045   0.0
SSC338 (SSC338Q) /CSM/SS/SSC3-B/SSC338Q.Seq.d/                       1041   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15980|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region.  1033   0.0    2
M20909|M20909.1 Dictyostelium discoideum cell surface glycoprotein PsA precursor (D19) gene, complete cds.  1033   0.0    2
BD075065|BD075065.1 Expression of gonadotropin in Dictyostelium.    68   5e-15  2
A98322|A98322.1 Sequence 1 from Patent WO9913081.                  68   5e-15  2
A21625|A21625.1 expression vector pMUW1630.                        62   3e-13  2
U20661|U20661.1 Dictyostelium discoideum unknown internal repeat protein gene, complete cds, and unknown orf1, orf2 and orf3 genes, partial cds.    66   6e-08  2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   1e-05  9
U16308|U16308.1 Caldocellum saccharolyticum endoglucanase/mannanase (celC) pseudogene, complete cds.    54   8e-04  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    46   0.002  10
AC116215|AC116215.5 Rattus norvegicus clone CH230-98H24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    54   0.003  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur...    53   7e-06
(P36170) RecName: Full=Putative uncharacterized protein YKR102W;...    33   5.9

 psg: 0.92  gvh: 0.68  alm: 0.21  top: 0.40  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSE593 is pla

>SSE593Z.Seq
----------GTAAATATAAATTAAAAAAATGAAATTCCAACATACATTTATGCATTATT
ATCACTATTAACATATGCAAATGCATATGATTATTTCACAACAACATTGGCCAATCAAAA
TCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAGATT
TGTCCGTTACATTCCTGATGCTACCAATACAAATCAATTCACTTTTGCCGAATATACTAC
AAACCAATGTACTGTTCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGATCA
AACTTCTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCACACC
CGCACCAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAACACC
AACAAATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTCAAC
TGTTGTTGCAAGTTTATCACTCATTATATTCTCAATGATTCTTTCCCTTTGTTAATTTTA
AAAATAACAAATGGTAAAAATTATTTGGCATTTTCAAGTACAATTTTAAATTTTTCAAAA
AAAAATAAAATTAAATAAATAATTAAATAAATTAATTAATAAAAAAAATAAAATTAAAAC
TTTTTTAATTTAAAAATAAA