>SSF725 (SSF725Q) /CSM/SS/SSF7-B/SSF725Q.Seq.d/
XXXXXXXXXXCCTCTGAATTTATTATGTATTCATTCGCTAGATGCTCAAATCCATCATTG
GAGATCACTCGTCAACCATTGTCTATTGATTTCTCAATTGCAGGATACGCTTTTCTTGAT
AGTCAACCCGCCGATGGTATCTATAATCCATTGGTCGATAGTCCAATGGCTGGTGTGGTG
GTTGAATTGTTAACTTCAAGTGGTTTACCAGTTAGAAATAAACTTGGTATTGTTTTACCC
TCAACTACAGACAATCGTGGCTCCTATATCTTTAGTGATGTTGCCAGAGGTGCCTATCGT
ATTAAATTCACTTTTCCACCTCAATACGAACCAACTATTAAAATTAAAAATGCTGATAAT
TATAAATCTTCAAAAATTAATCCAAATTTCTCAACTGATCTCTATATACTTTCAAATACT
GCCTTGGGTGTAAGATTGACAACAACTGATGATATTGGTGTTACAACTGATAGAATCTTA
CCTGGTATTAATGGTGGAGTAGTTGGAATATAAATTTACCAATTTAAAAAAAAAAAAAAA

---SEFIMYSFARCSNPSLEITRQPLSIDFSIAGYAFLDSQPADGIYNPLVDSPMAGVVV
ELLTSSGLPVRNKLGIVLPSTTDNRGSYIFSDVARGAYRIKFTFPPQYEPTIKIKNADNY
KSSKINPNFSTDLYILSNTALGVRLTTTDDIGVTTDRILPGINGGVVGI*iyqfkkkkk

Frame A:
---l*iyyvfir*mlksiigdhsstivy*flncrirfs**strrwyl*sigr*sngwcgg
*ivnfkwfts*k*twycftlnyrqswllyl**ccqrclsy*ihfstsirtny*n*kc**l
*ifkn*skfln*slytfkyclgckidnn**ywcyn**nltwy*wwsswninlpi*kkkk


Frame B:
---SEFIMYSFARCSNPSLEITRQPLSIDFSIAGYAFLDSQPADGIYNPLVDSPMAGVVV
ELLTSSGLPVRNKLGIVLPSTTDNRGSYIFSDVARGAYRIKFTFPPQYEPTIKIKNADNY
KSSKINPNFSTDLYILSNTALGVRLTTTDDIGVTTDRILPGINGGVVGI*iyqfkkkkk


Frame C:
---lnllcihsldaqihhwrslvnhcllisqlqdtlflivnppmvsiihwsivqwlvwwl
nc*lqvvyqleinlvlfypqlqtivapislvmlpevpivlnslfhlntnqllklkmliii
nlqkliqisqlisiyfqilpwv*d*qqlmilvlqliesylvlmve*leykftnlkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF725 (SSF725Q) /CSM/SS/SSF7-B/SSF725Q.Seq.d/                       1021   0.0
SSA658 (SSA658Q) /CSM/SS/SSA6-C/SSA658Q.Seq.d/                       1013   0.0
SLA122 (SLA122Q) /CSM/SL/SLA1-A/SLA122Q.Seq.d/                        977   0.0
CHE419 (CHE419Q) /CSM/CH/CHE4-A/CHE419Q.Seq.d/                        952   0.0
AFI392 (AFI392Q) /CSM/AF/AFI3-D/AFI392Q.Seq.d/                        656   0.0
SSE874 (SSE874Q) /CSM/SS/SSE8-D/SSE874Q.Seq.d/                        654   0.0
AFL338 (AFL338Q) /CSM/AF/AFL3-B/AFL338Q.Seq.d/                        640   0.0
AFI218 (AFI218Q) /CSM/AF/AFI2-A/AFI218Q.Seq.d/                        527   e-149
AFI310 (AFI310Q) /CSM/AF/AFI3-A/AFI310Q.Seq.d/                        492   e-138
AFI739 (AFI739Q) /CSM/AF/AFI7-B/AFI739Q.Seq.d/                        456   e-127

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    28   0.035  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    48   0.13   1
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    32   0.16   7
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    32   0.27   8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    30   0.37   12
BI512253|BI512253.1 BB160008B10E09.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160008B10E09 5', mRNA sequence.    46   0.51   1
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    36   0.92   7
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             32   1.1    10
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   1.1    10
AC007799|AC007799.4 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 34 unordered pieces.    36   1.2    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001337_286(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    47   2e-04
AP009486_65(AP009486|pid:none) Macrococcus caseolyticus JCSC5402...    45   0.001
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    45   0.002
(Q4A0V8) RecName: Full=Uro-adherence factor A; Flags: Precursor;...    44   0.002
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    44   0.003
CP001175_455(CP001175|pid:none) Listeria monocytogenes HCC23, co...    44   0.003
AE1335(AE1335) probable peptidoglycan bound protein (LPXTG motif...    42   0.008
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    42   0.013
AE017262_2096(AE017262|pid:none) Listeria monocytogenes str. 4b ...    41   0.017
FM242711_2075(FM242711|pid:none) Listeria monocytogenes Clip8145...    41   0.017

 psg: 0.71  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSF725 is nuc

>SSF725Z.Seq
----------CCTCTGAATTTATTATGTATTCATTCGCTAGATGCTCAAATCCATCATTG
GAGATCACTCGTCAACCATTGTCTATTGATTTCTCAATTGCAGGATACGCTTTTCTTGAT
AGTCAACCCGCCGATGGTATCTATAATCCATTGGTCGATAGTCCAATGGCTGGTGTGGTG
GTTGAATTGTTAACTTCAAGTGGTTTACCAGTTAGAAATAAACTTGGTATTGTTTTACCC
TCAACTACAGACAATCGTGGCTCCTATATCTTTAGTGATGTTGCCAGAGGTGCCTATCGT
ATTAAATTCACTTTTCCACCTCAATACGAACCAACTATTAAAATTAAAAATGCTGATAAT
TATAAATCTTCAAAAATTAATCCAAATTTCTCAACTGATCTCTATATACTTTCAAATACT
GCCTTGGGTGTAAGATTGACAACAACTGATGATATTGGTGTTACAACTGATAGAATCTTA
CCTGGTATTAATGGTGGAGTAGTTGGAATATAAATTTACCAATTTAAAAAAAAAAAAAAA