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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSF883
Library SS
(Link to library)
Clone ID SSF883
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SSF883E
(Link to Original site)
Representative DNA sequence 
>SSF883 (SSF883Q) /CSM/SS/SSF8-D/SSF883Q.Seq.d/
TACATATTTATACACTTTAGGATGTATTCTTTTTTATTTAAATATATTATTATTGGTGAT
ACTGGTGTTGGTAAATCAGTTTACTTTTACAATTCACTGATAAAAGATTTCAACCAGTAC
ATGATTTAACTATAGGTGTTGAGTTTGGTGCAAGAATGATAACAATTGATAATAAAGCTA
TAAAATTACAAATCTGGGATACTGCAGGACAAGAATCATTTAGATCAATTACTCGTTCAT
ATTATAGAGGTTCTGCTGGTGCATTACTTGTATATGATATTACTAGACGTGATACATTTA
ATCATTTAACTTGTTGGCTTAAGGATGCAAGATCATATGCAAATAGTAATATGACAATCA
TTTTAATTGGAAATAAATCTGATATGGAATCAAAGAGAGCAGTATCATACGAGGAAGGTA
GACAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCAA
ACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGAG
ATTTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAAG
ATGGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCAGATGTTGCAAATAAATTATTT
ATCAATATTTCCTCTATTTAAAAGAAAAAATAAAAAAACATAATAAAAAATAAAAAATA
sequence update 1999. 4. 7
Translated Amino Acid sequence 
hiytl*dvfffi*iyyyw*ywcw*ISLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAI
KLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTII
LIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGD
FDINNESFGIKLGAPTSKQDGTDQKPAGGGCCRCCK*iiyqyflylkekikkhnkk*ki
Translated Amino Acid sequence (All Frames) 
Frame A:
yifihfrmysflfkyiiigdtgvgksvyfynslikdfnqymi*l*vlslvqe**qliikl
*nyksgilqdknhldqllvhiievllvhylymilldvihlii*lvglrmqdhmqivi*qs
f*leinliwnqreqyhtrkvdnlqmkmdlsfwkhqqkqlqtskkhl*iqplksmkkfkre
isiltmkvleln*vhqppnkmvpiknqlvvdvadvanklfinissi*kkk*kniiknkk


Frame B:
tylytlgcilfylnilllvilvlvnqftftih**kistst*fnyrc*vwckndnn***sy
kitnlgycrtrii*inysfil*rfcwcitci*yy*t*yi*sfnlla*gckiick**ydnh
fnwk*i*ygikessiirgr*ticr*kwtylfgnisknsfkrrrsickysl*nl*knskgr
fry*q*kfwn*irctnlqtrwyrsktswwwmlqmlqinylsifplfkrknkkt**kikn


Frame C:
hiytl*dvfffi*iyyyw*ywcw*ISLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAI
KLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTII
LIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGD
FDINNESFGIKLGAPTSKQDGTDQKPAGGGCCRCCK*iiyqyflylkekikkhnkk*ki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF883 (SSF883Q) /CSM/SS/SSF8-D/SSF883Q.Seq.d/                       1346   0.0
SSH387 (SSH387Q) /CSM/SS/SSH3-D/SSH387Q.Seq.d/                        724   0.0
SSC664 (SSC664Q) /CSM/SS/SSC6-C/SSC664Q.Seq.d/                        446   e-124
SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/                         90   5e-17
SSI654 (SSI654Q) /CSM/SS/SSI6-C/SSI654Q.Seq.d/                         88   2e-16
VSK285 (VSK285Q) /CSM/VS/VSK2-D/VSK285Q.Seq.d/                         82   1e-14
VSA193 (VSA193Q) /CSM/VS/VSA1-D/VSA193Q.Seq.d/                         82   1e-14
SSM345 (SSM345Q) /CSM/SS/SSM3-B/SSM345Q.Seq.d/                         82   1e-14
SSM262 (SSM262Q) /CSM/SS/SSM2-C/SSM262Q.Seq.d/                         82   1e-14
SSM129 (SSM129Q) /CSM/SS/SSM1-B/SSM129Q.Seq.d/                         82   1e-14
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U02926|U02926.1 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds.  1112  0.0  3
AV967454|AV967454.1 Ciona intestinalis cDNA, clone:cieg22e04, 5' end, single read.   121  3e-48  5
BW192002|BW192002.1 Ciona intestinalis cDNA, clone:ciad095h04, 5' end, single read.   121  3e-48  5
AV951778|AV951778.1 Ciona intestinalis cDNA, clone:cieg06e02, 5' end, single read.   121  4e-48  5
BW035310|BW035310.1 Ciona intestinalis cDNA, clone:cibd028g08, 5' end, single read.   121  4e-48  5
BW189969|BW189969.1 Ciona intestinalis cDNA, clone:ciad089c20, 5' end, single read.   121  4e-48  5
BW049473|BW049473.1 Ciona intestinalis cDNA, clone:cibd067j24, 5' end, single read.   121  5e-48  5
BW190472|BW190472.1 Ciona intestinalis cDNA, clone:ciad090l08, 5' end, single read.   121  5e-48  5
BW266395|BW266395.1 Ciona intestinalis cDNA, clone:cign043p03, 5' end, single read.   121  6e-48  5
BW043181|BW043181.1 Ciona intestinalis cDNA, clone:cibd051p02, 5' end, single read.   121  7e-48  5
dna update 2003. 9. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36409) RecName: Full=Ras-related protein Rab-2A;                    361   e-104
U02926_1(U02926|pid:none) Dictyostelium discoideum Ax3 Rab2 mRNA...   361   2e-99
(P53994) RecName: Full=Ras-related protein Rab-2A;  &AB232585_1(...   283   5e-80
(P61019) RecName: Full=Ras-related protein Rab-2A;  &(P61105) Re...   281   2e-79
(Q90965) RecName: Full=Ras-related protein Rab-2A;  &S52325(S523...   281   2e-79
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ...   281   2e-79
AY891305_1(AY891305|pid:none) Synthetic construct Homo sapiens c...   281   7e-79
(P49104) RecName: Full=Ras-related protein Rab-2-B;  &BT068076_1...   279   9e-79
DQ397202_1(DQ397202|pid:none) Saccharum officinarum small GTP bi...   279   9e-79
EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot...   278   2e-78
protein update 2009. 7. 7
PSORT 

 psg: 0.69  gvh: 0.36  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSF883 is cyt
5' end seq. ID SSF883F
5' end seq. 
>SSF883F.Seq
TACATATTTATACACTTTAGGATGTATTCTTTTTTATTTAAATATATTATTATTGGTGAT
ACTGGTGTTGGTAAATCATGTTTACTTTTACAATTCACTGATAAAAGATTTCAACCAGTA
CATGATTTAACTATAGGTGTTGAGTTTGGTGCAAGAATGATAACAATTGATAATAAAGCT
ATAAAATTACAAATCTGGGATACTGCAGGACAAGAATCATTTAGATCAATTACTCGTTCA
TATTATAGAGGTTCTGCTGGTGCATTACTTGTATATGATATTACTAGACGTGATACATTT
AATCATTTAACTTGTTGGCTTAAGGATGCAAGATCATATGCAAATAGTAATATGACAATC
ATTTTAATTGGAAATAAATCTGATATGGAATCAAAGAGAGCAGTATCATACGAGGAAGGT
AGACAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCA
AACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGA
GATTTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAA
GATGGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCA----------
Length of 5' end seq. 640
3' end seq. ID SSF883Z
3' end seq. 
>SSF883Z.Seq
----------GTTTACTTTTACAATTCACTGATAAAAGATTTCAACCAGTACATGATTTA
ACTATAGGTGTTGAGTTTGGTGCAAGAATGATAACAATTGATAATAAAGCTATAAAATTA
CAAATCTGGGATACTGCAGGACAAGAATCATTTAGATCAATTACTCGTTCATATTATAGA
GGTTCTGCTGGTGCATTACTTGTATATGATATTACTAGACGTGATACATTTAATCATTTA
ACTTGTTGGCTTAAGGATGCAAGATCATATGCAAATAGTAATATGACAATCATTTTAATT
GGAAATAAATCTGATATGGAATCAAAGAGAGCAGTATCATACGAGGAAGGTAGACAATTT
GCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCAAACGTCGAA
GAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGAGATTTCGAT
ATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAAGATGGTACC
GATCAAAAACCAGCTGGTGGTGGATGTTGCAAATAAATTATTTATCAATATTTCCTCTAT
TTAAAAGAAAAAATAAAAAAACATAATAAAAAATAAAAAATAAAAACTTTAC
Length of 3' end seq. 642
Connected seq. ID SSF883P
Connected seq. 
>SSF883P.Seq
TACATATTTATACACTTTAGGATGTATTCTTTTTTATTTAAATATATTATTATTGGTGAT
ACTGGTGTTGGTAAATCATGTTTACTTTTACAATTCACTGATAAAAGATTTCAACCAGTA
CATGATTTAACTATAGGTGTTGAGTTTGGTGCAAGAATGATAACAATTGATAATAAAGCT
ATAAAATTACAAATCTGGGATACTGCAGGACAAGAATCATTTAGATCAATTACTCGTTCA
TATTATAGAGGTTCTGCTGGTGCATTACTTGTATATGATATTACTAGACGTGATACATTT
AATCATTTAACTTGTTGGCTTAAGGATGCAAGATCATATGCAAATAGTAATATGACAATC
ATTTTAATTGGAAATAAATCTGATATGGAATCAAAGAGAGCAGTATCATACGAGGAAGGT
AGACAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCA
AACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGA
GATTTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAA
GATGGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCA----------GTTTACTTTT
ACAATTCACTGATAAAAGATTTCAACCAGTACATGATTTAACTATAGGTGTTGAGTTTGG
TGCAAGAATGATAACAATTGATAATAAAGCTATAAAATTACAAATCTGGGATACTGCAGG
ACAAGAATCATTTAGATCAATTACTCGTTCATATTATAGAGGTTCTGCTGGTGCATTACT
TGTATATGATATTACTAGACGTGATACATTTAATCATTTAACTTGTTGGCTTAAGGATGC
AAGATCATATGCAAATAGTAATATGACAATCATTTTAATTGGAAATAAATCTGATATGGA
ATCAAAGAGAGCAGTATCATACGAGGAAGGTAGACAATTTGCAGATGAAAATGGACTTAT
CTTTTTGGAAACATCAGCAAAAACAGCTTCAAACGTCGAAGAAGCATTTGTAAATACAGC
CTCTAAAATCTATGAAAAAATTCAAAAGGGAGATTTCGATATTAACAATGAAAGTTTTGG
AATTAAATTAGGTGCACCAACCTCCAAACAAGATGGTACCGATCAAAAACCAGCTGGTGG
TGGATGTTGCAAATAAATTATTTATCAATATTTCCTCTATTTAAAAGAAAAAATAAAAAA
ACATAATAAAAAATAAAAAATAAAAACTTTAC
Length of connected seq. 1282
Full length Seq ID SSF883E
Full length Seq. 
>SSF883E.Seq
TACATATTTATACACTTTAGGATGTATTCTTTTTTATTTAAATATATTATTATTGGTGAT
ACTGGTGTTGGTAAATCAGTTTACTTTTACAATTCACTGATAAAAGATTTCAACCAGTAC
ATGATTTAACTATAGGTGTTGAGTTTGGTGCAAGAATGATAACAATTGATAATAAAGCTA
TAAAATTACAAATCTGGGATACTGCAGGACAAGAATCATTTAGATCAATTACTCGTTCAT
ATTATAGAGGTTCTGCTGGTGCATTACTTGTATATGATATTACTAGACGTGATACATTTA
ATCATTTAACTTGTTGGCTTAAGGATGCAAGATCATATGCAAATAGTAATATGACAATCA
TTTTAATTGGAAATAAATCTGATATGGAATCAAAGAGAGCAGTATCATACGAGGAAGGTA
GACAATTTGCAGATGAAAATGGACTTATCTTTTTGGAAACATCAGCAAAAACAGCTTCAA
ACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAAATCTATGAAAAAATTCAAAAGGGAG
ATTTCGATATTAACAATGAAAGTTTTGGAATTAAATTAGGTGCACCAACCTCCAAACAAG
ATGGTACCGATCAAAAACCAGCTGGTGGTGGATGTTGCAGATGTTGCAAATAAATTATTT
ATCAATATTTCCTCTATTTAAAAGAAAAAATAAAAAAACATAATAAAAAATAAAAAATA
Length of full length seq. 719