>SSG556 (SSG556Q) /CSM/SS/SSG5-C/SSG556Q.Seq.d/
XXXXXXXXXXATTTAGAATTCTTTACAATTGTTGCATCAGTGCCATACGAAACGGATTCA
ATGTCATCACCAACAATAATAAATTCAAATCCTTTCCAAAGAGATGAATATTGTACTGGT
TCAGTAGATACTCCAGTTACTCATCTCGAGCCATCTTATATAACTAAAACTACAACTGTA
AAAACTACTACCACAACTAAAAAGATACCTCAACAACAACAACAACAACAAAATAATCAG
ATTGAAAATAGTAAATCAATAGTTGAGTCAGATATAAAACAACTACCATTTGATCAACAA
TCACATCAAAATCAACAACACCAAAATTCCACACCAAGAAGTTTTAATCTTTCCCCAAAG
TTTAACTCTTCAACATGTACTGTAAATAGAACTCCAGTTGATAACAATGCAAGCGATTTA
AAATCAAGTTTGGATATGAGAAGATACTCTAGAGATTTAATACCAACCAAAATCACAACA
TAATTCTTTATATATTAATAATTTTTGTATAATTTATAATATCAATTAAAATAAAAAAAT
AATCAAAGATAATCAAAAAATAAATCTTTATTTTTTACAATT

---LEFFTIVASVPYETDSMSSPTIINSNPFQRDEYCTGSVDTPVTHLEPSYITKTTTVK
TTTTTKKIPQQQQQQQNNQIENSKSIVESDIKQLPFDQQSHQNQQHQNSTPRSFNLSPKF
NSSTCTVNRTPVDNNASDLKSSLDMRRYSRDLIPTKITT*ffiy**flynl*yqlk*knn
qr*sknkslffti

Frame A:
---frilynccisairngfnvitnnnkfksfpkr*ilywfsryssyssrailyn*nynck
nyyhn*kdtsttttttk*sd*k**ins*vrykttti*stitsksttpkfhtkkf*sfpkv
*lfnmyck*nss**qckrfkikfgyekil*rfntnqnhniilyiliifv*fiisikikk*
skiikk*ififyn


Frame B:
---LEFFTIVASVPYETDSMSSPTIINSNPFQRDEYCTGSVDTPVTHLEPSYITKTTTVK
TTTTTKKIPQQQQQQQNNQIENSKSIVESDIKQLPFDQQSHQNQQHQNSTPRSFNLSPKF
NSSTCTVNRTPVDNNASDLKSSLDMRRYSRDLIPTKITT*ffiy**flynl*yqlk*knn
qr*sknkslffti


Frame C:
---*nslqllhqchtkriqchhqq**iqilskemnivlvq*ilqllisshli*lklql*k
llpqlkrylnnnnnnkiirlkivnq*lsqi*nnyhlinnhikinntkiphqevlifpqsl
tlqhvl*ielqlitmqai*nqvwi*edtlei*yqpksqhnslyinnfciiynin*nkkii
kdnqkinlyflq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG556 (SSG556Q) /CSM/SS/SSG5-C/SSG556Q.Seq.d/                        494   e-139
SSF551 (SSF551Q) /CSM/SS/SSF5-C/SSF551Q.Seq.d/                        494   e-139
SLE710 (SLE710Q) /CSM/SL/SLE7-A/SLE710Q.Seq.d/                        494   e-139
SSG854 (SSG854Q) /CSM/SS/SSG8-C/SSG854Q.Seq.d/                        488   e-137
VFH101 (VFH101Q) /CSM/VF/VFH1-A/VFH101Q.Seq.d/                         38   0.14
SHL125 (SHL125Q) /CSM/SH/SHL1-B/SHL125Q.Seq.d/                         38   0.14
AHM192 (AHM192Q) /CSM/AH/AHM1-D/AHM192Q.Seq.d/                         38   0.14
AHK511 (AHK511Q) /CSM/AH/AHK5-A/AHK511Q.Seq.d/                         38   0.14
AHJ879 (AHJ879Q) /CSM/AH/AHJ8-D/AHJ879Q.Seq.d/                         38   0.14
AHF829 (AHF829Q) /CSM/AH/AHF8-B/AHF829Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC113655|AC113655.4 Rattus norvegicus clone CH230-307E9, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   4e-05  8
AC110470|AC110470.4 Rattus norvegicus clone CH230-13H19, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    40   1e-04  8
AC111903|AC111903.4 Rattus norvegicus clone CH230-71P17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    40   0.003  8
AC120909|AC120909.5 Rattus norvegicus clone CH230-186K11, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    40   0.005  7
AC129665|AC129665.3 Rattus norvegicus clone CH230-1I3, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    40   0.015  8
AC120583|AC120583.4 Rattus norvegicus clone CH230-500E13, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    40   0.015  9
AC131551|AC131551.3 Rattus norvegicus clone CH230-11A22, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40   0.050  8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34   0.070  9
AC129285|AC129285.3 Rattus norvegicus clone CH230-6C19, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    40   0.073  7
AC120091|AC120091.4 Rattus norvegicus clone CH230-480B23, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    40   0.14   8

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 618,716,551

 psg: 0.75  gvh: 0.41  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSG556 is nuc

>SSG556Z.Seq
----------ATTTAGAATTCTTTACAATTGTTGCATCAGTGCCATACGAAACGGATTCA
ATGTCATCACCAACAATAATAAATTCAAATCCTTTCCAAAGAGATGAATATTGTACTGGT
TCAGTAGATACTCCAGTTACTCATCTCGAGCCATCTTATATAACTAAAACTACAACTGTA
AAAACTACTACCACAACTAAAAAGATACCTCAACAACAACAACAACAACAAAATAATCAG
ATTGAAAATAGTAAATCAATAGTTGAGTCAGATATAAAACAACTACCATTTGATCAACAA
TCACATCAAAATCAACAACACCAAAATTCCACACCAAGAAGTTTTAATCTTTCCCCAAAG
TTTAACTCTTCAACATGTACTGTAAATAGAACTCCAGTTGATAACAATGCAAGCGATTTA
AAATCAAGTTTGGATATGAGAAGATACTCTAGAGATTTAATACCAACCAAAATCACAACA
TAATTCTTTATATATTAATAATTTTTGTATAATTTATAATATCAATTAAAATAAAAAAAT
AATCAAAGATAATCAAAAAATAAATCTTTATTTTTTACAATT