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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSG748
Library SS
(Link to library)
Clone ID SSG748
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03270-1
Original site URL
Representative seq. ID SSG748E
(Link to Original site)
Representative DNA sequence 
>SSG748 (SSG748Q) /CSM/SS/SSG7-B/SSG748Q.Seq.d/
TCTTCAAAAACAACATCAAAGAAATAAAAGTGATGATAGATCACTGATGAATTCTTTTTT
CATTGTTGAATCAAAACCAAATAATAATAATAACAATAACAATAATAATAGTACTAATAT
CAATAATAAATCACCATTAAATGTAATAGATGAAGAAGAAGAGGGTTACCAACAAAGATT
GAATAATATACAACCACAACCACAACCACAACAATTTTCACCAATTCAACAACAAAAACA
AGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAATTAA
TCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGAAAA
TGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAAAAACTAG
TTCAATTAGAAATAGTAAAGATTCAACTTCACAATTTAATCGTCTAACACAATCCATTTC
ACCATCATCAGCTATTGATATAACCCAATCGATGACCTCTGGTTTAGATATTCCAAAGGT
AACCTCTGCTTCATTTTATCCAACAACAACAACGACAACAACAAAATCCACAACAATGAC
ATCTTCATCAACTTTACCAACCTCGAAAACCACCAGAACCCCAATGGAAGAAATTAAATA
CCTCAGAGAACAATTAGAAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAAAGATGGGA
TAAATTAATTGAATCTGCTAAAAAGAAGAGAGAGGTTAATTCTTCCACAAATTCAAATCC
TCCTTCAACTGGAAACTCATTATTAAATTCACCAAATATTTCAAGTAGTATGACTAATTA
ATAATAAATATAA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
LQKQHQRNKSDDRSLMNSFFIVESKPNNNNNNNNNNSTNINNKSPLNVIDEEEEGYQQRL
NNIQPQPQPQQFSPIQQQKQEQPNSFDDDLASKLKQVEINLVNQTVEALLEENKSLKQEN
EFLKDRIMQFRVEIEKKKTSSIRNSKDSTSQFNRLTQSISPSSAIDITQSMTSGLDIPKV
TSASFYPTTTTTTTKSTTMTSSSTLPTSKTTRTPMEEIKYLREQLEEKDKTIVEQKKRWD
KLIESAKKKREVNSSTNSNPPSTGNSLLNSPNISSSMTN***i*
Translated Amino Acid sequence (All Frames) 
Frame A:
sskttskk*k***itdefffhc*iktk****q*q***y*yq**itikcnr*rrrglptki
e*yttttttttiftnsttktrttk*f***fgfkt*tg*n*sc*sns*siirge*kfktrk
*ifkr*nyai*srd*eekn*fn*k**rfnfti*ssntihftiisy*ynpiddlwfryskg
nlcfilsnnnndnnkihnndifinftnlenhqnpngrn*ipqrtirrkg*nys*aekkmg
*in*ic*keerg*ffhkfkssfnwkliikftkyfk*yd*liini


Frame B:
LQKQHQRNKSDDRSLMNSFFIVESKPNNNNNNNNNNSTNINNKSPLNVIDEEEEGYQQRL
NNIQPQPQPQQFSPIQQQKQEQPNSFDDDLASKLKQVEINLVNQTVEALLEENKSLKQEN
EFLKDRIMQFRVEIEKKKTSSIRNSKDSTSQFNRLTQSISPSSAIDITQSMTSGLDIPKV
TSASFYPTTTTTTTKSTTMTSSSTLPTSKTTRTPMEEIKYLREQLEEKDKTIVEQKKRWD
KLIESAKKKREVNSSTNSNPPSTGNSLLNSPNISSSMTN***i*


Frame C:
fknnikeikvmidh**ilfsllnqnqiiiititiiivlisiinhh*m**mkkkrvtnkd*
iiynhnhnhnnfhqfnnknknnqivlmmiwlqnlnrlklillikqlkhy*rrikv*nkkm
nf*kielcnlesrlrrkklvqleivkiqlhnliv*hnpfhhhqlli*pnr*plv*ifqr*
pllhfiqqqqrqqqnpqq*hlhqlyqprkppepqwkklntsenn*kkrikl*lsrkkdgi
n*lnllkrrerlilpqiqillqlethy*ihqifqvv*linnky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSG748 (SSG748Q) /CSM/SS/SSG7-B/SSG748Q.Seq.d/                        571   e-162
SSA675 (SSA675Q) /CSM/SS/SSA6-D/SSA675Q.Seq.d/                        555   e-157
CFH139 (CFH139Q) /CSM/CF/CFH1-B/CFH139Q.Seq.d/                        153   5e-36
VFB583 (VFB583Q) /CSM/VF/VFB5-D/VFB583Q.Seq.d/                         40   0.054
AFM705 (AFM705Q) /CSM/AF/AFM7-A/AFM705Q.Seq.d/                         40   0.054
VSI424 (VSI424Q) /CSM/VS/VSI4-A/VSI424Q.Seq.d/                         38   0.21
VSH649 (VSH649Q) /CSM/VS/VSH6-C/VSH649Q.Seq.d/                         38   0.21
VSC721 (VSC721Q) /CSM/VS/VSC7-A/VSC721Q.Seq.d/                         38   0.21
VFI212 (VFI212Q) /CSM/VF/VFI2-A/VFI212Q.Seq.d/                         38   0.21
CFJ386 (CFJ386Q) /CSM/CF/CFJ3-D/CFJ386Q.Seq.d/                         38   0.21
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC146533|AC146533.1 Otolemur garnettii clone CH256-504C24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  0.062  5
AC018619|AC018619.3 Homo sapiens chromosome 11 clone RP11-164B14 map 11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    34  0.076  4
AC110129|AC110129.5 Rattus norvegicus clone CH230-272G15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40  0.28  7
AC092260|AC092260.1 Mus musculus clone RP23-50K5, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36  0.29  5
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    32  0.66  7
AC109165|AC109165.3 Mus musculus clone RP23-30B3, WORKING DRAFT SEQUENCE, 16 ordered pieces.    46  0.73  1
BH022870|BH022870.1 GH_MBb0003M08f Gossypium hirsutum L. Gossypium hirsutum genomic clone GH_MBb0003M08f, DNA sequence.    46  0.73  1
CC236031|CC236031.1 CH261-190B8_RM1.1 CH261 Gallus gallus genomic clone CH261-190B8, DNA sequence.    46  0.73  1
AL139075|AL139075.2 Campylobacter jejuni NCTC11168 complete genome; segment 2/6.    34  0.77  8
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    32  0.93  11
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM886060_16(AM886060|pid:none) Geobacillus stearothermophilus pl...    45   0.004
CP001230_922(CP001230|pid:none) Persephonella marina EX-H1, comp...    43   0.012
BA000043_2663(BA000043|pid:none) Geobacillus kaustophilus HTA426...    43   0.012
BA000043_1944(BA000043|pid:none) Geobacillus kaustophilus HTA426...    42   0.026
DQ868502_35(DQ868502|pid:none) Geobacillus stearothermophilus st...    42   0.026
CP000246_1826(CP000246|pid:none) Clostridium perfringens ATCC 13...    40   0.13
(P21249) RecName: Full=Major antigen; AltName: Full=Myosin-like ...    39   0.22
CP001207_21(CP001207|pid:none) Borrelia burgdorferi ZS7 plasmid ...    39   0.29
CP001272_29(CP001272|pid:none) Borrelia burgdorferi 156a plasmid...    39   0.29
CP001425_1(CP001425|pid:none) Borrelia burgdorferi 64b plasmid 6...    39   0.29
protein update 2009. 7. 7
PSORT 

 psg: 0.60  gvh: 0.33  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSG748 is nuc
5' end seq. ID SSG748F
5' end seq. 
>SSG748F.Seq
TCTTCAAAAACAACATCAAAGAAATAAAAGTGATGATAGATCACTGATGAATTCTTTTTT
CATTGTTGAATCAAAACCAAATAATAATAATAACAATAACAATAATAATAGTACTAATAT
CAATAATAAATCACCATTAAATGTAATAGATGAAGAAGAAGAGGGTTACCAACAAAGATT
GAATAATATACAACCACAACCACAACCACAACAATTTTCACCAATTCAACAACAAAAACA
ACAAGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAAT
TAATCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGA
AAATGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAA----
------
Length of 5' end seq. 416
3' end seq. ID SSG748Z
3' end seq. 
>SSG748Z.Seq
----------AGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGG
TTGAAATTAATCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAA
AACAAGAAAATGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGA
AAACTAGTTCAATTAGAAATAGTAAAGATTCAACTTCACAATTTAATCGTCTAACACAAT
CCATTTCACCATCATCAGCTATTGATATAACCCAATCGATGACCTCTGGTTTAGATATTC
CAAAGGTAACCTCTGCTTCATTTTATCCAACAACAACAACGACAACAACAAAATCCACAA
CAATGACATCTTCATCAACTTTACCAACCTCGAAAACCACCAGAACCCCAATGGAAGAAA
TTAAATACCTCAGAGAACAATTAGAAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAAA
GATGGGATAAATTAATTGAATCTGCTAAAAAGAAGAGAGAGGTTAATTCTTCCACAAATT
CAAATCCTCCTTCAACTGGAAACTCATTATTAAATTCACCAAATATTTCAAGTAGTATGA
CTAATTAATAATAAATATAAAAAATATAAA
Length of 3' end seq. 620
Connected seq. ID SSG748P
Connected seq. 
>SSG748P.Seq
TCTTCAAAAACAACATCAAAGAAATAAAAGTGATGATAGATCACTGATGAATTCTTTTTT
CATTGTTGAATCAAAACCAAATAATAATAATAACAATAACAATAATAATAGTACTAATAT
CAATAATAAATCACCATTAAATGTAATAGATGAAGAAGAAGAGGGTTACCAACAAAGATT
GAATAATATACAACCACAACCACAACCACAACAATTTTCACCAATTCAACAACAAAAACA
ACAAGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAAT
TAATCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGA
AAATGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAA----
------AGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGA
AATTAATCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACA
AGAAAATGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAAC
TAGTTCAATTAGAAATAGTAAAGATTCAACTTCACAATTTAATCGTCTAACACAATCCAT
TTCACCATCATCAGCTATTGATATAACCCAATCGATGACCTCTGGTTTAGATATTCCAAA
GGTAACCTCTGCTTCATTTTATCCAACAACAACAACGACAACAACAAAATCCACAACAAT
GACATCTTCATCAACTTTACCAACCTCGAAAACCACCAGAACCCCAATGGAAGAAATTAA
ATACCTCAGAGAACAATTAGAAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAAAGATG
GGATAAATTAATTGAATCTGCTAAAAAGAAGAGAGAGGTTAATTCTTCCACAAATTCAAA
TCCTCCTTCAACTGGAAACTCATTATTAAATTCACCAAATATTTCAAGTAGTATGACTAA
TTAATAATAAATATAAAAAATATAAA
Length of connected seq. 1036
Full length Seq ID SSG748E
Full length Seq. 
>SSG748E.Seq
TCTTCAAAAACAACATCAAAGAAATAAAAGTGATGATAGATCACTGATGAATTCTTTTTT
CATTGTTGAATCAAAACCAAATAATAATAATAACAATAACAATAATAATAGTACTAATAT
CAATAATAAATCACCATTAAATGTAATAGATGAAGAAGAAGAGGGTTACCAACAAAGATT
GAATAATATACAACCACAACCACAACCACAACAATTTTCACCAATTCAACAACAAAAACA
AGAACAACCAAATAGTTTTGATGATGATTTGGCTTCAAAACTTAAACAGGTTGAAATTAA
TCTTGTTAATCAAACAGTTGAAGCATTATTAGAGGAGAATAAAAGTTTAAAACAAGAAAA
TGAATTTTTAAAAGATAGAATTATGCAATTTAGAGTCGAGATTGAGAAGAAAAAAACTAG
TTCAATTAGAAATAGTAAAGATTCAACTTCACAATTTAATCGTCTAACACAATCCATTTC
ACCATCATCAGCTATTGATATAACCCAATCGATGACCTCTGGTTTAGATATTCCAAAGGT
AACCTCTGCTTCATTTTATCCAACAACAACAACGACAACAACAAAATCCACAACAATGAC
ATCTTCATCAACTTTACCAACCTCGAAAACCACCAGAACCCCAATGGAAGAAATTAAATA
CCTCAGAGAACAATTAGAAGAAAAGGATAAAACTATAGTTGAGCAGAAAAAAAGATGGGA
TAAATTAATTGAATCTGCTAAAAAGAAGAGAGAGGTTAATTCTTCCACAAATTCAAATCC
TCCTTCAACTGGAAACTCATTATTAAATTCACCAAATATTTCAAGTAGTATGACTAATTA
ATAATAAATATAA
Length of full length seq. 853