>SSH251 (SSH251Q) /CSM/SS/SSH2-C/SSH251Q.Seq.d/
GCAAAATGTTATGGTAAACAAATTGGATTTTTTGGTAATAAAACCACTCAATTTATAAAA
CCAAATCAAACTATTTTTTTAATTGGTGGAACAAAGAGATTATTTACAACTCAACAACAA
CAATCACCAAAAAAAGAAGAACCAAAATCTGAACAACAAAAAAAAGTAGAGGATAAAACT
GAAGAAAAAGAAAAAGAAAAAGATGAAGAAGAAAATGAAAATGAAAAAGAAAAAGAAAAT
GAAGATGGAGAAGGTCAAAAAAAAGAAATCTAAATTCAATGTACCACCAATTGTCACATC
TGTAACCTCAACTTTCTTTGCAGGTGTACTTGTTGCATCAACATTTGGTTATTTAAXXXX
XXXXXX

AKCYGKQIGFFGNKTTQFIKPNQTIFLIGGTKRLFTTQQQQSPKKEEPKSEQQKKVEDKT
EEKEKEKDEEENENEKEKENEDGEGQKKEI*iqcttnchicnlnflcrctcciniwlf--
-

Frame A:
AKCYGKQIGFFGNKTTQFIKPNQTIFLIGGTKRLFTTQQQQSPKKEEPKSEQQKKVEDKT
EEKEKEKDEEENENEKEKENEDGEGQKKEI*iqcttnchicnlnflcrctcciniwlf--
-


Frame B:
qnvmvnkldflvikplnl*nqiklff*lveqrdylqlnnnnhqkkknqnlnnkkk*rikl
kkkkkkkmkkkmkmkkkkkmkmekvkkkkskfnvppivtsvtstffagvlvastfgyl--
-


Frame C:
kmlw*tnwifw**nhsiyktksnyffnwwnkeiiynstttitkkrrtki*ttkksrg*n*
rkrkrkr*rrk*k*krkrk*rwrrskkrnlnsmyhqlshl*pqlslqvyllhqhlvi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ729 (VSJ729Q) /CSM/VS/VSJ7-B/VSJ729Q.Seq.d/                        228   5e-59
VSG495 (VSG495Q) /CSM/VS/VSG4-D/VSG495Q.Seq.d/                        228   5e-59
VFN518 (VFN518Q) /CSM/VF/VFN5-A/VFN518Q.Seq.d/                        228   5e-59
VFM724 (VFM724Q) /CSM/VF/VFM7-A/VFM724Q.Seq.d/                        228   5e-59
VFK851 (VFK851Q) /CSM/VF/VFK8-C/VFK851Q.Seq.d/                        228   5e-59
VFK311 (VFK311Q) /CSM/VF/VFK3-A/VFK311Q.Seq.d/                        228   5e-59
VFG529 (VFG529Q) /CSM/VF/VFG5-B/VFG529Q.Seq.d/                        228   5e-59
VFC824 (VFC824Q) /CSM/VF/VFC8-A/VFC824Q.Seq.d/                        228   5e-59
VFA430 (VFA430Q) /CSM/VF/VFA4-B/VFA430Q.Seq.d/                        228   5e-59
SSH251 (SSH251Q) /CSM/SS/SSH2-C/SSH251Q.Seq.d/                        228   5e-59

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.025  10
AC002427|AC002427.1 Homo sapiens BAC clone GS1-11E15 from 5q31, complete sequence.    38   0.65   2
AC114301|AC114301.2 Homo sapiens chromosome 5 clone RP11-143L23, complete sequence.    38   0.99   2
AC114318|AC114318.2 Homo sapiens chromosome 5 clone RP11-425E13, complete sequence.    36   1.5    3
AC011398|AC011398.8 Homo sapiens chromosome 5 clone CTB-25H4, complete sequence.    42   1.8    2
AC136383|AC136383.1 Rattus norvegicus clone CH230-53O20, *** SEQUENCING IN PROGRESS ***, 60 unordered pieces.    36   1.8    3
BG364774|BG364774.1 dc75h04.y1 NICHD XGC Emb1 Xenopus laevis cDNA clone IMAGE:3403230 5', mRNA sequence.    32   3.0    2
AL954219|AL954219.1 Pan troglodytes chromosome 22 clone PTB-302M06 map q21.2, complete sequence.    40   3.4    3
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   4.3    6
AC021464|AC021464.2 Homo sapiens clone RP11-282K23, WORKING DRAFT SEQUENCE, 15 unordered pieces.    38   4.3    2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 331,102,907

 psg: 0.70  gvh: 0.39  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.07
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for SSH251 is nuc

>SSH251F.Seq
GCAAAATGTTATGGTAAACAAATTGGATTTTTTGGTAATAAAACCACTCAATTTATAAAA
CCAAATCAAACTATTTTTTTAATTGGTGGAACAAAGAGATTATTTACAACTCAACAACAA
CAATCACCAAAAAAAGAAGAACCAAAATCTGAACAACAAAAAAAAGTAGAGGATAAAACT
GAAGAAAAAGAAAAAGAAAAAGATGAAGAAGAAAATGAAAATGAAAAAGAAAAAGAAAAT
GAAGATGGAGAAGGTCAAAAAAAAGAAATCTAAATTCAATGTACCACCAATTGTCACATC
TGTAACCTCAACTTTCTTTGCAGGTGTACTTGTTGCATCAACATTTGGTTATTTAA----
------