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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH440
Library SS
(Link to library)
Clone ID SSH440
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15829-1
Original site URL
Representative seq. ID SSH440E
(Link to Original site)
Representative DNA sequence 
>SSH440 (SSH440Q) /CSM/SS/SSH4-B/SSH440Q.Seq.d/
GTTTGTATTTATTCAACATCAACAAAGATTTCCACAATTTTAAATTTCATTTGTAGTTCA
GGTACTTACCCACCAGATGTAATAAGAAATGGTCAAGATTACATCATTACTTATTATTCA
CCACTTGCATGTCCAACACCAATAATAACACGTGAAAAAGATAAAAATAAATTCTTTTCA
TATCCAAAAGTACAAAATGATAAAAATATTGCATCATTTGAAATTTGTGAAAATTCAACA
AATGTAATTTCATTTAATGATAATGCTCATTTCATTATTTTACCAATAAAACCAATTATA
AATAGTGTAAAATGAAGAAAAAGATAAAATTGTTTTAAGTGGATTATTTTTAAAGAGAAT
TAAAAATCATTATTCAGTAAGAATTAATAGTGGAATTCCATTAAATATTGGAAATATTAG
GTCAATAGTTTCATTCAATAGTTCAACAATTGTATTGAATAGAACAATTGATAATGGTAA
TGAAGTTGTAAGAGAAGTTTCAATTTATTTATCAAATTCTCCATCAGATTCATATTTATT
TGTAAATGGTACATCTTGGATTAGCATTGGTTCACCTGAACCACTTCCAATTAACAAGAA
TAAAAGTTCATCATTTATAAGTTCATTTTTTAGTTTTTTAAATCCATTTTGTTATTTCTA
AAATATAAAAAAAAAAATGAAAAAATAAAAAAAAAAATAAATAAATAATGCAACAGAATG
ATAATTATTT
sequence update 1999. 4. 9
Translated Amino Acid sequence 
fvfiqhqqrfpqf*isfvvqvlthqm**emvkitslliihhlhvqhq**hvkkikinsfh
iqkykmikilhhlkfvkiqqm*fhlmimlislfyq*nql*iv*NEEKDKIVLSGLFLKRI
KNHYSVRINSGIPLNIGNIRSIVSFNSSTIVLNRTIDNGNEVVREVSIYLSNSPSDSYLF
VNGTSWISIGSPEPLPINKNKSSSFISSFFSFLNPFCYF*nikkkmkk*kkk*innate*
*lf
Translated Amino Acid sequence (All Frames) 
Frame A:
vciyststkistilnficssgtyppdvirngqdyiityysplacptpiitrekdknkffs
ypkvqndkniasfeicenstnvisfndnahfiilpikpiinsvk*rkr*ncfkwiifken
*kslfskn**wnsikywky*vnsfiq*fnncie*nn**w**sckrsfnlfikfsirfifi
ckwyild*hwft*ttsn*qe*kfiiykfif*ffksillflkykkknekikkkink*cnrm
iii


Frame B:
fvfiqhqqrfpqf*isfvvqvlthqm**emvkitslliihhlhvqhq**hvkkikinsfh
iqkykmikilhhlkfvkiqqm*fhlmimlislfyq*nql*iv*NEEKDKIVLSGLFLKRI
KNHYSVRINSGIPLNIGNIRSIVSFNSSTIVLNRTIDNGNEVVREVSIYLSNSPSDSYLF
VNGTSWISIGSPEPLPINKNKSSSFISSFFSFLNPFCYF*nikkkmkk*kkk*innate*
*lf


Frame C:
lylfninkdfhnfkfhl*frylptrcnkkwsrlhhyllfttcmsntnnnt*kr*k*ilfi
skstk**kycii*nl*kfnkcnfi***csfhyftnktnyk*ckmkkkiklf*vdyf*rel
kiiiq*elivefh*ileilgq*fhsivqqly*ieqlimvmkl*ekfqfiyqilhqihiyl
*mvhlglalvhlnhfqltrikvhhl*vhflvf*ihfviski*kkk*knkkknk*imqqnd
ny
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH440 (SSH440Q) /CSM/SS/SSH4-B/SSH440Q.Seq.d/                       1239   0.0
SSJ157 (SSJ157Q) /CSM/SS/SSJ1-C/SSJ157Q.Seq.d/                        515   e-145
SFH291 (SFH291Q) /CSM/SF/SFH2-D/SFH291Q.Seq.d/                        341   9e-93
CHA802 (CHA802Q) /CSM/CH/CHA8-A/CHA802Q.Seq.d/                        319   3e-86
CHC823 (CHC823Q) /CSM/CH/CHC8-A/CHC823Q.Seq.d/                        119   6e-26
CFB279 (CFB279Q) /CSM/CF/CFB2-D/CFB279Q.Seq.d/                        111   2e-23
CHA402 (CHA402Q) /CSM/CH/CHA4-A/CHA402Q.Seq.d/                         88   2e-16
VFO663 (VFO663Q) /CSM/VF/VFO6-C/VFO663Q.Seq.d/                         40   0.046
VFH831 (VFH831Q) /CSM/VF/VFH8-B/VFH831Q.Seq.d/                         40   0.046
SSG653 (SSG653Q) /CSM/SS/SSG6-C/SSG653Q.Seq.d/                         40   0.046
own update 2004. 8. 8
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   624  0.0  6
AC020725|AC020725.4 Homo sapiens chromosome 5 clone RP11-495N17, WORKING DRAFT SEQUENCE, 30 unordered pieces.    32  0.002  10
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32  0.003  11
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    32  0.004  12
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  0.004  17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.008  12
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.009  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36  0.011  12
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    36  0.012  10
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.015  9
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117070_46(AC117070|pid:none) Dictyostelium discoideum chromoso...   212   e-106
CP000882_132(CP000882|pid:none) Hemiselmis andersenii chromosome...    38   0.28
EF523383_1(EF523383|pid:none) Plasmodium falciparum multidrug re...    34   5.4
AE014188_279(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.4
CP000027_1035(CP000027|pid:none) Dehalococcoides ethenogenes 195...    34   5.4
FJ439781_1(FJ439781|pid:none) Lactobacillus acidophilus strain L...    33   7.0
AY497022_1(AY497022|pid:none) Trichophyton rubrum carboxypeptida...    33   7.0
CP000033_1013(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    33   7.0
CP001047_532(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    33   9.1
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSH440 is cyt
5' end seq. ID SSH440F
5' end seq. 
>SSH440F.Seq
GTTTGTATTTATTCAACATCAACAAAGATTTCCACAATTTTAAATTTCATTTGTAGTTCA
GGTACTTACCCACCAGATGTAATAAGAAATGGTCAAGATTACATCATTACTTATTATTCA
CCACTTGCATGTCCAACACCAATAATAACACGTGAAAAAGATAAAAATAAATTCTTTTCA
TATACTCCAAAAGTACAAAATGATAAAAATATTGCATCATTTGAAATTTGTGAAAATTCA
ACAAATGTAATTTCATTTAATGATAATGCTCATTTCATTATTTTACCAATAAAACCAATT
ATAAATAGTGTAAA----------
Length of 5' end seq. 314
3' end seq. ID SSH440Z
3' end seq. 
>SSH440Z.Seq
----------TCCAAAAGTACAAAATGATAAAAATATTGCATCATTTGAAATTTGTGAAA
ATTCAACAAATGTAATTTCATTTAATGATAATGCTCATTTCATTATTTTACCAATAAAAC
CAATTATAAATAGTGTAAAAATGAATGAAGAAAAAGATAAAATTGTTTTAAGTGGATTAT
TTTTAAAGAGAATTAAAAATCATTATTCAGTAAGAATTAATAGTGGAATTCCATTAAATA
TTGGAAATATTAGGTCAATAGTTTCATTCAATAGTTCAACAATTGTATTGAATAGAACAA
TTGATAATGGTAATGAAGTTGTAAGAGAAGTTTCAATTTATTTATCAAATTCTCCATCAG
ATTCATATTTATTTGTAAATGGTACATCTTGGATTAGCATTGGTTCACCTGAACCACTTC
CAATTAACAAGAATAAAAGTTCATCATTTATAAGTTCATTTTTTAGTTTTTTAAATCCAT
TTTGTTATTTCTAAAATATAAAAAAAAAAATGAAAAAATAAAAAAAAAAATAAATAAATA
ATGCAACAGAATGATAATTATTTTTTAAATTC
Length of 3' end seq. 562
Connected seq. ID SSH440P
Connected seq. 
>SSH440P.Seq
GTTTGTATTTATTCAACATCAACAAAGATTTCCACAATTTTAAATTTCATTTGTAGTTCA
GGTACTTACCCACCAGATGTAATAAGAAATGGTCAAGATTACATCATTACTTATTATTCA
CCACTTGCATGTCCAACACCAATAATAACACGTGAAAAAGATAAAAATAAATTCTTTTCA
TATACTCCAAAAGTACAAAATGATAAAAATATTGCATCATTTGAAATTTGTGAAAATTCA
ACAAATGTAATTTCATTTAATGATAATGCTCATTTCATTATTTTACCAATAAAACCAATT
ATAAATAGTGTAAA----------TCCAAAAGTACAAAATGATAAAAATATTGCATCATT
TGAAATTTGTGAAAATTCAACAAATGTAATTTCATTTAATGATAATGCTCATTTCATTAT
TTTACCAATAAAACCAATTATAAATAGTGTAAAAATGAATGAAGAAAAAGATAAAATTGT
TTTAAGTGGATTATTTTTAAAGAGAATTAAAAATCATTATTCAGTAAGAATTAATAGTGG
AATTCCATTAAATATTGGAAATATTAGGTCAATAGTTTCATTCAATAGTTCAACAATTGT
ATTGAATAGAACAATTGATAATGGTAATGAAGTTGTAAGAGAAGTTTCAATTTATTTATC
AAATTCTCCATCAGATTCATATTTATTTGTAAATGGTACATCTTGGATTAGCATTGGTTC
ACCTGAACCACTTCCAATTAACAAGAATAAAAGTTCATCATTTATAAGTTCATTTTTTAG
TTTTTTAAATCCATTTTGTTATTTCTAAAATATAAAAAAAAAAATGAAAAAATAAAAAAA
AAAATAAATAAATAATGCAACAGAATGATAATTATTTTTTAAATTC
Length of connected seq. 876
Full length Seq ID SSH440E
Full length Seq. 
>SSH440E.Seq
GTTTGTATTTATTCAACATCAACAAAGATTTCCACAATTTTAAATTTCATTTGTAGTTCA
GGTACTTACCCACCAGATGTAATAAGAAATGGTCAAGATTACATCATTACTTATTATTCA
CCACTTGCATGTCCAACACCAATAATAACACGTGAAAAAGATAAAAATAAATTCTTTTCA
TATCCAAAAGTACAAAATGATAAAAATATTGCATCATTTGAAATTTGTGAAAATTCAACA
AATGTAATTTCATTTAATGATAATGCTCATTTCATTATTTTACCAATAAAACCAATTATA
AATAGTGTAAAATGAAGAAAAAGATAAAATTGTTTTAAGTGGATTATTTTTAAAGAGAAT
TAAAAATCATTATTCAGTAAGAATTAATAGTGGAATTCCATTAAATATTGGAAATATTAG
GTCAATAGTTTCATTCAATAGTTCAACAATTGTATTGAATAGAACAATTGATAATGGTAA
TGAAGTTGTAAGAGAAGTTTCAATTTATTTATCAAATTCTCCATCAGATTCATATTTATT
TGTAAATGGTACATCTTGGATTAGCATTGGTTCACCTGAACCACTTCCAATTAACAAGAA
TAAAAGTTCATCATTTATAAGTTCATTTTTTAGTTTTTTAAATCCATTTTGTTATTTCTA
AAATATAAAAAAAAAAATGAAAAAATAAAAAAAAAAATAAATAAATAATGCAACAGAATG
ATAATTATTT
Length of full length seq. 730