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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH836
Library SS
(Link to library)
Clone ID SSH836
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12201-1
Original site URL
Representative seq. ID SSH836E
(Link to Original site)
Representative DNA sequence 
>SSH836 (SSH836Q) /CSM/SS/SSH8-B/SSH836Q.Seq.d/
AAATATTAAAAAAATGAAATTAAGTAAATTTATAATTCTAATTATATTTTTAATATTTAT
AATAAAATCGAATGGAGAACAAACATCATCATCAGTGGAAATTGATGATGATTCAAAATG
CTATGGAGAAACAATGGAAACATGTTTTACAAGTGGTTCATGTTGTATTTGGTGTGGATC
ACCAAAAAATACAACAATTACAAAAGTTGCGGGTGTATGTTTTTTACAAAGTTCACTATC
CAGTTGTCCACAAGACATTTTGACGTTAACAGGTGATAAATGTAATGAATATAATAGTGC
ATCATGTACTTGTAGTTTCAGGAATACAACAAATAGTATTATTAGTTCATCATCATCACC
ATCATCATTACCACCAATTAACTATAGTTTAATATTTATTTCAATTGTATTGATTTTCCC
ATGTATTTTCTACTCTTCCTTTTAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAAAAAAAAAATAAATAAATAAAATAAAATGTGTATTGATTTTAAAT
sequence update 1998. 2. 4
Translated Amino Acid sequence 
NIKKMKLSKFIILIIFLIFIIKSNGEQTSSSVEIDDDSKCYGETMETCFTSGSCCIWCGS
PKNTTITKVAGVCFLQSSLSSCPQDILTLTGDKCNEYNSASCTCSFRNTTNSIISSSSSP
SSLPPINYSLIFISIVLIFPCIFYSSF*ink*ink*ink*inkkknk*ik*nvy*f*
Translated Amino Acid sequence (All Frames) 
Frame A:
ky*kneik*iynsnyifniynkiewrtniiisgn***fkmlwrnngnmfykwfmlylvwi
tkkynnykscgcmfftkftiqlstrhfdvnr**m**i**cimyl*fqeynk*yy*fiiit
iiittn*l*fniyfncidfpmyfllfllnk*ink*ink*ink*kkk*inkikcvliln


Frame B:
NIKKMKLSKFIILIIFLIFIIKSNGEQTSSSVEIDDDSKCYGETMETCFTSGSCCIWCGS
PKNTTITKVAGVCFLQSSLSSCPQDILTLTGDKCNEYNSASCTCSFRNTTNSIISSSSSP
SSLPPINYSLIFISIVLIFPCIFYSSF*ink*ink*ink*inkkknk*ik*nvy*f*


Frame C:
ilkk*n*vnl*f*lyf*yl**nrmenkhhhqwklmmiqnamekqwkhvlqvvhvvfgvdh
qkiqqlqklrvyvfykvhypvvhktf*r*qvinvmniivhhvlvvsgiqqivllvhhhhh
hhyhqltiv*ylfqly*fshvfstlpfk*ink*ink*ink*ikkkink*nkmcidfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH836 (SSH836Q) /CSM/SS/SSH8-B/SSH836Q.Seq.d/                        559   e-158
SSD858 (SSD858Q) /CSM/SS/SSD8-C/SSD858Q.Seq.d/                        559   e-158
SSB603 (SSB603Q) /CSM/SS/SSB6-A/SSB603Q.Seq.d/                        500   e-140
VFM587 (VFM587Q) /CSM/VF/VFM5-D/VFM587Q.Seq.d/                         40   0.034
VFL187 (VFL187Q) /CSM/VF/VFL1-D/VFL187Q.Seq.d/                         40   0.034
VFB287 (VFB287Q) /CSM/VF/VFB2-D/VFB287Q.Seq.d/                         36   0.52
SSM633 (SSM633Q) /CSM/SS/SSM6-B/SSM633Q.Seq.d/                         36   0.52
SSH863 (SSH863Q) /CSM/SS/SSH8-C/SSH863Q.Seq.d/                         36   0.52
SSH422 (SSH422Q) /CSM/SS/SSH4-A/SSH422Q.Seq.d/                         36   0.52
SSC356 (SSC356Q) /CSM/SS/SSC3-C/SSC356Q.Seq.d/                         36   0.52
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI378040|BI378040.1 BFLG3_001843 Amphioxus 5-6 hrs cDNA library (Name convention: BFLG or MPMGp498) Branchiostoma floridae cDNA clone MPMGp498C1517 5', mRNA sequence.    46  0.44  1
AC092588|AC092588.2 Homo sapiens BAC clone RP11-44A12 from 2, complete sequence.    40  1.5  3
U20341|U20341.1 Cassava vein mosaic virus, complete genome.       44  1.7  1
BX571843|BX571843.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-250K10.    44  1.7  1
U59751|U59751.1 Cassava vein mosaic virus, complete genome.       44  1.7  1
AC008115|AC008115.4 Homo sapiens 12 BAC RP11-180M15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42  1.8  3
AC009082|AC009082.7 Homo sapiens chromosome 16 clone RP11-354N7, complete sequence.    42  3.2  2
AC109357|AC109357.3 Homo sapiens BAC clone RP11-636M7 from 4, complete sequence.    40  3.3  3
AC101973|AC101973.2 Mus musculus clone RP24-280A2, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  3.6  2
BX571898|BX571898.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  4.3  3
dna update 2003. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_10(AC115598|pid:none) Dictyostelium discoideum chromoso...    74   2e-12
AY944632_1(AY944632|pid:none) Aspergillus fumigatus ADAM proteas...    38   0.14
AP008215_1440(AP008215|pid:none) Oryza sativa (japonica cultivar...    33   4.5
protein update 2009. 3. 6
PSORT 

 psg: 1.02  gvh: 0.72  alm: 0.24  top: 0.00  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSH836 is pla
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH836E
Full length Seq. 
>SSH836E.Seq
AAATATTAAAAAAATGAAATTAAGTAAATTTATAATTCTAATTATATTTTTAATATTTAT
AATAAAATCGAATGGAGAACAAACATCATCATCAGTGGAAATTGATGATGATTCAAAATG
CTATGGAGAAACAATGGAAACATGTTTTACAAGTGGTTCATGTTGTATTTGGTGTGGATC
ACCAAAAAATACAACAATTACAAAAGTTGCGGGTGTATGTTTTTTACAAAGTTCACTATC
CAGTTGTCCACAAGACATTTTGACGTTAACAGGTGATAAATGTAATGAATATAATAGTGC
ATCATGTACTTGTAGTTTCAGGAATACAACAAATAGTATTATTAGTTCATCATCATCACC
ATCATCATTACCACCAATTAACTATAGTTTAATATTTATTTCAATTGTATTGATTTTCCC
ATGTATTTTCTACTCTTCCTTTTAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAAAAAAAAAATAAATAAATAAAATAAAATGTGTATTGATTTTAAAT
Length of full length seq. 534