>SSH854 (SSH854Q) /CSM/SS/SSH8-C/SSH854Q.Seq.d/
XXXXXXXXXXCAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAATTGAT
AGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTTATAT
GGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGGTATG
AATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTGTGTA
TTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATTTGCA
ATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGCTTTA
AATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTGGGTT
TATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTTATTA
CAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAATTGACCCATCA
ACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCATTAT
TTAAATAAAAACATAATTAAACTATATAAAAAA

---AVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMYRIDLGVPHLAPGMN
TGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALN
PVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCLLQERFDVIERPGYIAPLIDPST
AVSSY*nnneitlydlnhylnkniiklykk

Frame A:
---scnfskfiiw*srfn**silccspnswlycrcwyliwlpskyv*n*lgcstfstwye
ywssfphgddvn*ysmslcirylcfqclgsss*sycticnwfsfiywssnrf*flwrcfk
ss*sfrpinhkwsmvsslgllarsyswghlgcfhlsllitrtf*cyrktwiyctin*pin
csffllk***nnti*p*slfk*khn*ti*k


Frame B:
---AVTLANLLSGRVGLIDSLYYVAAQILGCIAGAGILYGCLPNMYRIDLGVPHLAPGMN
TGQAFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALN
PVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIYRCLLQERFDVIERPGYIAPLIDPST
AVSSY*nnneitlydlnhylnkniiklykk


Frame C:
---l*l*qiyylvesv*livyimlqpkflvvlpvlvsymvafqicieltwvfhi*hlv*i
lvklsswr*c*lvfyvfvy*vplfsmfgivvlivlhhlqlv*lylle*q*vlislevl*i
qlef*ahqs*veygliigfigsvl*lgpswllssivayyknvlml*kdldilhh*lthql
qfllikiimk*hymtliii*ikt*lnyik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH854 (SSH854Q) /CSM/SS/SSH8-C/SSH854Q.Seq.d/                       1235   0.0
SSD296 (SSD296Q) /CSM/SS/SSD2-D/SSD296Q.Seq.d/                       1229   0.0
SLC875 (SLC875Q) /CSM/SL/SLC8-D/SLC875Q.Seq.d/                       1229   0.0
SSD468 (SSD468Q) /CSM/SS/SSD4-C/SSD468Q.Seq.d/                       1225   0.0
SLC418 (SLC418Q) /CSM/SL/SLC4-A/SLC418Q.Seq.d/                       1213   0.0
SSJ351 (SSJ351Q) /CSM/SS/SSJ3-C/SSJ351Q.Seq.d/                       1183   0.0
SSC789 (SSC789Q) /CSM/SS/SSC7-D/SSC789Q.Seq.d/                       1156   0.0
SSG234 (SSG234Q) /CSM/SS/SSG2-B/SSG234Q.Seq.d/                       1128   0.0
SSF302 (SSF302Q) /CSM/SS/SSF3-A/SSF302Q.Seq.d/                       1116   0.0
SSC859 (SSC859Q) /CSM/SS/SSC8-C/SSC859Q.Seq.d/                       1078   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB032841|AB032841.1 Dictyostelium discoideum gene for AqpA, complete cds.   763  0.0  2
AF272824|AF272824.1 Tetrodontophora bielanensis mitochondrion, complete genome.    34  0.11  4
AC141035|AC141035.1 Rattus norvegicus clone CH230-470E22, *** SEQUENCING IN PROGRESS ***, 36 unordered pieces.    40  0.20  4
AC122183|AC122183.2 Mus musculus chromosome UNK clone RP23-14P23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  0.30  4
AC013659|AC013659.3 Homo sapiens clone RP11-20A13, WORKING DRAFT SEQUENCE, 40 unordered pieces.    42  0.35  4
AZ760652|AZ760652.1 1M0554J01R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0554J01 R, DNA sequence.    36  0.40  3
AC093786|AC093786.3 Homo sapiens chromosome 4 clone RP11-213A7, complete sequence.    34  0.43  8
BX005272|BX005272.6 Zebrafish DNA sequence from clone DKEY-23D7.    42  0.51  5
AL158801|AL158801.4 Human chromosome 14 DNA sequence BAC R-665C16 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    46  0.52  1
AC092399|AC092399.2 Drosophila melanogaster, chromosome 2L, region 36B-36C, BAC clone BACR31N11, complete sequence.    44  0.54  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9V5Z7) RecName: Full=Aquaporin;  &AE013599_1356(AE013599|pid:n...   125   1e-27
AB365319_1(AB365319|pid:none) Suncus murinus Aqp5 mRNA for aquap...   120   2e-26
AY890983_1(AY890983|pid:none) Synthetic construct Homo sapiens c...   120   2e-26
AY894080_1(AY894080|pid:none) Synthetic construct Homo sapiens c...   120   2e-26
(Q9WTY4) RecName: Full=Aquaporin-5;          Short=AQP-5;  &AF08...   119   5e-26
(A8W649) RecName: Full=Aquaporin-5;          Short=AQP-5;  &EU19...   119   5e-26
(Q06019) RecName: Full=Lens fiber major intrinsic protein; AltNa...   119   9e-26
(Q8C4A0) RecName: Full=Aquaporin-6;          Short=AQP-6;  &AK08...   118   1e-25
BC115587_1(BC115587|pid:none) Mus musculus aquaporin 6, mRNA (cD...   118   1e-25
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;...   118   2e-25

 psg: 0.79  gvh: 0.52  alm: 0.24  top: 0.57  tms: 0.27  mit: 0.28  mip: 0.25
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSH854 is pla

>SSH854Z.Seq
----------CAGCTGTAACTTTAGCAAATTTATTATCTGGTAGAGTCGGTTTAATTGAT
AGTCTATATTATGTTGCAGCCCAAATTCTTGGTTGTATTGCCGGTGCTGGTATCTTATAT
GGTTGCCTTCCAAATATGTATAGAATTGACTTGGGTGTTCCACATTTAGCACCTGGTATG
AATACTGGTCAAGCTTTCCTCATGGAGATGATGTTAACTAGTATTCTATGTCTTTGTGTA
TTAGGTACCTCTGTTTTCAATGTTTGGGATCGTCGTCTTAATCGTATTGCACCATTTGCA
ATTGGTTTAGCTTTATTTATTGGAGTAGCAATAGGTTTTAATTTCTCTGGAGGTGCTTTA
AATCCAGTTAGAGTTTTAGGCCCATCAATCATAAGTGGAGTATGGTCTCATCATTGGGTT
TATTGGCTCGGTCCTATAGTTGGGGCCATCTTGGCTGCTTTCATCTATCGTTGCTTATTA
CAAGAACGTTTTGATGTTATAGAAAGACCTGGATATATTGCACCATTAATTGACCCATCA
ACTGCAGTTTCTTCTTATTAAAATAATAATGAAATAACACTATATGACCTTAATCATTAT
TTAAATAAAAACATAATTAAACTATATAAAAAA