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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI127
Library SS
(Link to library)
Clone ID SSI127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SSI127F
(Link to Original site)
Representative DNA sequence 
>SSI127 (SSI127Q) /CSM/SS/SSI1-B/SSI127Q.Seq.d/
AAAAATAAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGC
TTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAA
GCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCAT
CACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTAA
AAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAA
TATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAA
AAAAAAAGAAAAAAAGATTTTAAAAAAAAAAAAAAAATTAGAAAAAAAAAXXXXXXXXXX
sequence update 1998.11.10
Translated Amino Acid sequence 
kikkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltmllkypqg*si
tflcnslkcissl*QKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKK
KKEKKILKKKKKLEKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
knkkknkkknf*nspstfwcfc*anakvslspfalhyspqaqiissstndapqvssglih
hipmqlsqmykqsltkkni*kkkkkkkkky*niffkinfkyk**cffffykkkkekkkkk
kkrkkdfkkkkkirkk---


Frame B:
kikkkikkktfktllllfgasvklmlrclsppllcitllklr*srapltmllkypqg*si
tflcnslkcissl*QKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKRKKK
KKEKKILKKKKKLEKK---


Frame C:
k*kkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh*rcsssilrvnps
hsyatlsnv*avfnkkkylkkkkkekkkilkyff*nqf*i*iimffffl*kkerkkekkk
kkkkrf*kkkkn*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        387   e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        387   e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        387   e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        387   e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        387   e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        387   e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        387   e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        387   e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        387   e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        387   e-106
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   387  e-124  2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  4e-04  1
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.006  1
AC120895|AC120895.4 Rattus norvegicus clone CH230-180J3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    50  0.022  1
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence.    50  0.022  1
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.052  2
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.063  3
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.063  3
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence.    48  0.086  1
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.086  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se...    32   8.7
protein update 2009. 2. 1
PSORT 

 psg: 0.44  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.08
 nuc: 1.83  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSI127 is nuc
5' end seq. ID SSI127F
5' end seq. 
>SSI127F.Seq
AAAAATAAAAAAAAAAATAAAAAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGC
TTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAA
GCTCAGATAATCTCGAGCTCCACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCAT
CACATTCCTATGCAACTCTCTCAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTAA
AAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAATCAATTTTAAA
TATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGAAAAAAAAA
AAAAAAAGAAAAAAAGATTTTAAAAAAAAAAAAAAAATTAGAAAAAAAAA----------
Length of 5' end seq. 410
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -