>SSI158 (SSI158Q) /CSM/SS/SSI1-C/SSI158Q.Seq.d/
XXXXXXXXXXATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCAGAC
GTTAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGAGAA
GCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTAACA
ATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGAATGG
GTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAATTCAA
TCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCTAAAT
TTGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTAGTAATAGTGCTCATTCCTATA
TGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAGATAAAGATTCTTTCATCTATA
TTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAGGTAGTTATTTTTCTGAATAAA
ATAAAATAAATTAAAAATAAATTAAATTAAATAAATAATAATAAAAATAAAAATAAATTT
ATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATGA

---frcriislg*lcy*srr*lhsywciykcsrwynh*rsq*aniigpqwqhnhw*ssnn
wsqlyt*smycrrelfd*MGSILEPESYVEANSILGSNSILTKGSRIKSGELWVGKPAKF
VRNLTENEKIDISNSAHSYMLNAEKAFESFGLDKDSFIYIDAQQQGIQVGWKGSYFSE*n
kin*k*iklnk***k*k*iytekvviknkkkkkkkkm

Frame A:
---frcriislg*lcy*srr*lhsywciykcsrwynh*rsq*aniigpqwqhnhw*ssnn
wsqlyt*smycrrelfd*MGSILEPESYVEANSILGSNSILTKGSRIKSGELWVGKPAKF
VRNLTENEKIDISNSAHSYMLNAEKAFESFGLDKDSFIYIDAQQQGIQVGWKGSYFSE*n
kin*k*iklnk***k*k*iytekvviknkkkkkkkkm


Frame B:
---lgvgssvwdncviradvnyihigaftnvqdgtiireanepisldhngstiigdqvti
ghscileactveencliewvqfwnqnhtlkqtqf*vqiqs*pkvlvlnlvnfglvnqlnl
lei*lkmkksilvivlipic*mlkkhlnllv*ikilssilmlnnkafklvgkvviflnki
k*iknkln*innnknknkfipkkl*sktkkkkkkkk*


Frame C:
---*v*dhqfgitvlleqtlitfilvhlqmfkmvqslekpmsqyhwttmaaqslvik*ql
vtvvylkhvlskriv*lngfnfgtriir*sklnfrfkfnlnqrfsy*iw*tlgw*ts*ic
*kfn*k*knry***csflyvkc*ksi*ifwfr*rffhly*csttrhsswler*lff*ik*
nklkin*ik*iiikikinlyrkscnqkqkkkkkkkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI158 (SSI158Q) /CSM/SS/SSI1-C/SSI158Q.Seq.d/                       1039   0.0
VSC316 (VSC316Q) /CSM/VS/VSC3-A/VSC316Q.Seq.d/                       1025   0.0
SSI788 (SSI788Q) /CSM/SS/SSI7-D/SSI788Q.Seq.d/                       1025   0.0
VSJ586 (VSJ586Q) /CSM/VS/VSJ5-D/VSJ586Q.Seq.d/                       1011   0.0
VSH367 (VSH367Q) /CSM/VS/VSH3-C/VSH367Q.Seq.d/                        981   0.0
SSI719 (SSI719Q) /CSM/SS/SSI7-A/SSI719Q.Seq.d/                        955   0.0
VSD825 (VSD825Q) /CSM/VS/VSD8-B/VSD825Q.Seq.d/                        422   e-117
SSD483 (SSD483Q) /CSM/SS/SSD4-D/SSD483Q.Seq.d/                         40   0.041
VHP709 (VHP709Q) /CSM/VH/VHP7-A/VHP709Q.Seq.d/                         36   0.65
VHJ410 (VHJ410Q) /CSM/VH/VHJ4-A/VHJ410Q.Seq.d/                         36   0.65

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844873|AL844873.4 Mouse DNA sequence from clone RP23-26H8 on chromosome 2.    50  0.034  1
AZ394819|AZ394819.1 1M0158J04R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0158J04 R, DNA sequence.    50  0.034  1
AC138638|AC138638.2 Mus musculus chromosome 8 clone RP23-380M21 map 8, LOW-PASS SEQUENCE SAMPLING.    48  0.14  1
AC118408|AC118408.6 Rattus norvegicus clone CH230-213D23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48  0.14  1
AC102210|AC102210.3 Mus musculus clone RP24-351F4, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  0.14  1
AE001182|AE001182.1 Borrelia burgdorferi (section 68 of 70) of the complete genome.    32  0.18  4
AC036227|AC036227.2 Homo sapiens chromosome 11 clone RP11-593K21 map 11, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44  0.30  3
AL627106|AL627106.8 Human DNA sequence from clone RP11-7K11 on chromosome 1.    38  0.40  2
AC133429|AC133429.2 Rattus norvegicus clone CH230-288B24, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.54  1
AC116708|AC116708.4 Mus musculus clone RP23-70F22, WORKING DRAFT SEQUENCE, 13 unordered pieces.    46  0.54  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876807_1(AJ876807|pid:none) Acanthamoeba polyphaga partial mRN...    99   2e-37
AM999887_1236(AM999887|pid:none) Wolbachia endosymbiont of Culex...    77   6e-24
AK103904_1(AK103904|pid:none) Oryza sativa Japonica Group cDNA c...    72   8e-24
AE017196_417(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    77   3e-23
AF249876_1(AF249876|pid:none) Arabidopsis thaliana transcription...    75   6e-23
AC079677_2(AC079677|pid:none) Arabidopsis thaliana chromosome 1 ...    75   8e-23
AP007255_1792(AP007255|pid:none) Magnetospirillum magneticum AMB...    76   2e-22
AC137669_17(AC137669|pid:none) Medicago truncatula clone mth2-27...    73   7e-22
AC025808_34(AC025808|pid:none) Genomic sequence for Arabidopsis ...    74   2e-21
AC024609_8(AC024609|pid:none) Arabidopsis thaliana chromosome I ...    74   2e-21

 psg: 0.75  gvh: 0.31  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI158 is nuc

>SSI158Z.Seq
----------ATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCAGAC
GTTAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGAGAA
GCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTAACA
ATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGAATGG
GTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAATTCAA
TCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCTAAAT
TTGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTAGTAATAGTGCTCATTCCTATA
TGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAGATAAAGATTCTTTCATCTATA
TTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAGGTAGTTATTTTTCTGAATAAA
ATAAAATAAATTAAAAATAAATTAAATTAAATAAATAATAATAAAAATAAAAATAAATTT
ATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAAAAAAAAAAAAAATGA