>SSI178 (SSI178Q) /CSM/SS/SSI1-D/SSI178Q.Seq.d/
TTCACTCAATATAATATTACACACAATGTCTATGGTAGCCAAACGTCTCTTCACCACCCA
ATCAATCGAATCAGCCAAAAAGATTCTTTCCTCATTACCAAAGAGCAACATGGATCAAAA
AATCAAAGATTTACTCGAGAAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACAC
CCCAAAGACTGAACAAGAACAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAA
AGCAGGAGAAAAAGCTTTCGAAGCTATGGGTAAAGCATACAAAGATGTTCAACCAATTGA
AACTAAAACCGTCAAGGATTTCATTCCAGAATACACTGCTTAAATAAATAAATGATGATA
ATAATAATAGTTTAAATGAAATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAA
CAAGTTTGGAGAGAATTTTAAATAATAATAATAATAAXXXXXXXXXX

SLNIILHTMSMVAKRLFTTQSIESAKKILSSLPKSNMDQKIKDLLEKNADIAKKYNLKYT
PKTEQEQLNEIVEITNSFKKAGEKAFEAMGKAYKDVQPIETKTVKDFIPEYTA*ink***
***fk*nitnqi**nhkq*nkfgenfk****---

Frame A:
ftqynithnvygsqtslhhpinrisqkdsflitkeqhgsknqrftrekr*hrqki*lkih
pkd*trtik*nrrnhqliqksrrksfrsyg*siqrcstn*n*nrqgfhsrihclnk*mmi
iiiv*mkyykpnlvks*tikqvwref*iiiii---


Frame B:
SLNIILHTMSMVAKRLFTTQSIESAKKILSSLPKSNMDQKIKDLLEKNADIAKKYNLKYT
PKTEQEQLNEIVEITNSFKKAGEKAFEAMGKAYKDVQPIETKTVKDFIPEYTA*ink***
***fk*nitnqi**nhkq*nkfgenfk****---


Frame C:
hsi*yytqclw*pnvssppnqsnqpkrffphyqratwikkskiysrktltspknit*ntp
qrlnknn*mks*kspthskkqekklsklwvkhtkmfnqlklkpsrisfqntllk*inddn
nnslneilqtkfskiinnktslerilnnnnn---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG388 (VSG388Q) /CSM/VS/VSG3-D/VSG388Q.Seq.d/                        672   0.0
SSI178 (SSI178Q) /CSM/SS/SSI1-D/SSI178Q.Seq.d/                        672   0.0
SSI177 (SSI177Q) /CSM/SS/SSI1-D/SSI177Q.Seq.d/                        666   0.0
CHL118 (CHL118Q) /CSM/CH/CHL1-A/CHL118Q.Seq.d/                        666   0.0
VFJ849 (VFJ849Q) /CSM/VF/VFJ8-C/VFJ849Q.Seq.d/                        658   0.0
VSJ181 (VSJ181Q) /CSM/VS/VSJ1-D/VSJ181Q.Seq.d/                        634   0.0
VSH362 (VSH362Q) /CSM/VS/VSH3-C/VSH362Q.Seq.d/                        601   e-171
VSC828 (VSC828Q) /CSM/VS/VSC8-B/VSC828Q.Seq.d/                        218   6e-56
VSE731 (VSE731Q) /CSM/VS/VSE7-B/VSE731Q.Seq.d/                        159   5e-38
VFO711 (VFO711Q) /CSM/VF/VFO7-A/VFO711Q.Seq.d/                         40   0.029

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC015169|AC015169.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***.    42  0.021  2
AQ426031|AQ426031.1 CITBI-E1-2568K23.TF CITBI-E1 Homo sapiens genomic clone 2568K23, genomic survey sequence.    46  0.38  1
BH818623|BH818623.1 BACPP11-M22.y Pristionchus pacificus BAC ends Pristionchus pacificus genomic, DNA sequence.    40  0.91  2
AX458543|AX458543.1 Sequence 89 from Patent WO0246454.            34  1.3  5
AC084865|AC084865.3 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence.    40  1.3  5
AX619628|AX619628.1 Sequence 2591 from Patent WO02094868.         34  1.4  2
D13816|D13816.1 E. hirae DNA for Na+ -ATPase alpha and beta subunits, complete cds.    44  1.5  1
AC079441|AC079441.23 Mus musculus clone rp23-349b16 map 17 strain C57BL/6J, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  1.5  1
AC008373|AC008373.7 Homo sapiens chromosome 5 clone CTC-198O10, WORKING DRAFT SEQUENCE, 15 ordered pieces.    44  1.5  1
AC010630|AC010630.4 Homo sapiens chromosome 5 clone CTD-2222A3, WORKING DRAFT SEQUENCE, 14 ordered pieces.    44  1.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910996_377(AM910996|pid:none) Plasmodium knowlesi strain H chr...    37   0.16
AY682195_70(AY682195|pid:none) Lactobacillus plantarum bacteriop...    37   0.16
CP001229_1413(CP001229|pid:none) Sulfurihydrogenibium azorense A...    37   0.21
(Q9TLS1) RecName: Full=Prenyl transferase;          EC=2.5.1.-; ...    36   0.36
CP000942_165(CP000942|pid:none) Ureaplasma parvum serovar 3 str....    35   0.62
CP001184_372(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    35   0.62
AE002116_6(AE002116|pid:none) Ureaplasma parvum serovar 3 str. A...    35   0.62
(Q58974) Uncharacterized protein MJ1579.  &B64497(B64497) &L7711...    35   0.81
EF634321_1(EF634321|pid:none) Heliothis armigera cypovirus 5 iso...    35   0.81
BA000032_107(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    35   0.81

 psg: 0.91  gvh: 0.39  alm: 0.46  top: 0.60  tms: 0.00  mit: 0.39  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSI178 is mit

>SSI178F.Seq
TTCACTCAATATAATATTACACACAATGTCTATGGTAGCCAAACGTCTCTTCACCACCCA
ATCAATCGAATCAGCCAAAAAGATTCTTTCCTCATTACCAAAGAGCAACATGGATCAAAA
AATCAAAGATTTACTCGAGAAAAACGCTGACATCGCCAAAAAATATAACTTAAAATACAC
CCCAAAGACTGAACAAGAACAATTAAATGAAATCGTAGAAATCACCAACTCATTCAAAAA
AGCAGGAGAAAAAGCTTTCGAAGCTATGGGTAAAGCATACAAAGATGTTCAACCAATTGA
AACTAAAACCGTCAAGGATTTCATTCCAGAATACACTGCTTAAATAAATAAATGATGATA
ATAATAATAGTTTAAATGAAATATTACAAACCAAATTTAGTAAAATCATAAACAATAAAA
CAAGTTTGGAGAGAATTTTAAATAATAATAATAATAA----------