NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI659
Library SS
(Link to library)
Clone ID SSI659
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15676-1
Original site URL
Representative seq. ID SSI659Z
(Link to Original site)
Representative DNA sequence 
>SSI659 (SSI659Q) /CSM/SS/SSI6-C/SSI659Q.Seq.d/
XXXXXXXXXXTGTCAAAGGTTTGTCCCAAGGAAAAGTTAAAGTTGAAGAAGGACCAAGGA
AATTAGCTCCTCATGGGAAAAATGCTGGTGAATGGAAACCCGGCCCTTTCAATAAAATTG
GTGGTAGATGGCAATTAGTTAATCTAAAGGGTTAATTTAATTAATTTTTTTTTTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAAGAATTAATCATTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAATATTTGATGACCAATCATTTCCAATTATAATTGTAAAAAAAAAAAAAAAATATAT
TAAAAATTGTTTAAATAAAATTATTTTGTTTTAAAATT
sequence update 1998. 1.11
Translated Amino Acid sequence 
---VKGLSQGKVKVEEGPRKLAPHGKNAGEWKPGPFNKIGGRWQLVNLKG*fn*fffff*
kkkkkkkrinhlkkkkkkkkkylmtnhfql*l*kkkknilkiv*iklfcfki
Translated Amino Acid sequence (All Frames) 
Frame A:
---VKGLSQGKVKVEEGPRKLAPHGKNAGEWKPGPFNKIGGRWQLVNLKG*fn*fffff*
kkkkkkkrinhlkkkkkkkkkylmtnhfql*l*kkkknilkiv*iklfcfki


Frame B:
---skvcpkeklklkkdqgn*llmgkmlvngnpalsiklvvdgn*li*rvnlinfffffk
kkkkkkkelii*kkkkkkkkni**piisnynckkkkkiy*klfk*nyfvlk


Frame C:
---qrfvprks*s*rrtkeissswekcw*metrpfq*nww*mais*skgli*lifffflk
kkkkkkkn*sfkkkkkkkkkifddqsfpiiivkkkkkyiknclnkiilf*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI659 (SSI659Q) /CSM/SS/SSI6-C/SSI659Q.Seq.d/                        305   2e-82
SSI108 (SSI108Q) /CSM/SS/SSI1-A/SSI108Q.Seq.d/                        250   1e-65
SLF784 (SLF784Q) /CSM/SL/SLF7-D/SLF784Q.Seq.d/                        220   1e-56
SSK295 (SSK295Q) /CSM/SS/SSK2-D/SSK295Q.Seq.d/                        194   6e-49
SSJ873 (SSJ873Q) /CSM/SS/SSJ8-D/SSJ873Q.Seq.d/                        194   6e-49
SSI673 (SSI673Q) /CSM/SS/SSI6-D/SSI673Q.Seq.d/                        194   6e-49
SSI261 (SSI261Q) /CSM/SS/SSI2-C/SSI261Q.Seq.d/                        194   6e-49
SSH870 (SSH870Q) /CSM/SS/SSH8-C/SSH870Q.Seq.d/                        194   6e-49
SSH112 (SSH112Q) /CSM/SS/SSH1-A/SSH112Q.Seq.d/                        194   6e-49
SSG759 (SSG759Q) /CSM/SS/SSG7-C/SSG759Q.Seq.d/                        194   6e-49
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ488770|AJ488770.1 Dictyostelium discoideum mRNA for OSBPa protein (osbA gene).   176  1e-40  1
BQ836931|BQ836931.1 rf35h05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:YKZ1_CAEEL P34328 HYPOTHETICAL 12.3 KD PROTEIN C14B9.1 IN CHROMOSOME III. [1] ;, mRNA sequence.    44  0.027  2
AY233723|AY233723.1 Cylindromyrmex striatus cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product.    48  0.068  1
AF200383|AF200383.1 Ceratosolen nexilis cytochrome oxidase subunit I (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome oxidase subunit II (COII) gene gene, partial cds; mitochondrial genes for mitochondrial products.    48  0.068  1
AF187125|AF187125.1 Pityokteines minutus cytochrome oxidase I gene, partial cds; mitochondrial gene for mitochondrial product.    48  0.068  1
AF200385|AF200385.1 Ceratosolen cf. nexilis cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product.    48  0.068  1
AF142124|AF142124.1 Bdellodes sp. A cytochrome oxidase I (COI) gene, partial cds; mitochondrial gene for mitochondrial product.    48  0.068  1
AY050668|AY050668.1 Homo sapiens PKC-potentiated PP1 inhibitory protein (PPP1R14A) gene, complete cds.    46  0.27  1
AC083794|AC083794.1 Homo sapiens chromosome 4 clone RP11-140E3 map 4, LOW-PASS SEQUENCE SAMPLING.    46  0.27  1
AF303527|AF303527.1 Hypochilus jemez cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial gene for mitochondrial product.    46  0.27  1
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MPQ7) RecName: Full=Oxysterol-binding protein 1; AltName: Ful...    73   3e-12
CP001575_381(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    32   5.2
protein update 2009. 6.13
PSORT 

 psg: 0.43  gvh: 0.19  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSI659 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI659Z
3' end seq. 
>SSI659Z.Seq
----------TGTCAAAGGTTTGTCCCAAGGAAAAGTTAAAGTTGAAGAAGGACCAAGGA
AATTAGCTCCTCATGGGAAAAATGCTGGTGAATGGAAACCCGGCCCTTTCAATAAAATTG
GTGGTAGATGGCAATTAGTTAATCTAAAGGGTTAATTTAATTAATTTTTTTTTTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAAGAATTAATCATTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAATATTTGATGACCAATCATTTCCAATTATAATTGTAAAAAAAAAAAAAAAATATAT
TAAAAATTGTTTAAATAAAATTATTTTGTTTTAAAATT
Length of 3' end seq. 328
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -