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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI809
Library SS
(Link to library)
Clone ID SSI809
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01788-1
Original site URL
Representative seq. ID SSI809F
(Link to Original site)
Representative DNA sequence 
>SSI809 (SSI809Q) /CSM/SS/SSI8-A/SSI809Q.Seq.d/
ATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAATTTCAAAA
ATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTCTCATTGA
GAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGAAGAATTAG
ATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACAAGCTG
AAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATATCCATA
AGGCTCAAAAGAAAATCAAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGATTAAAAAT
AATTTATTTTCAACATAATTCATATATTAGTAATATAATAACATTTCCCATCTTTTTTTT
TTAAAAATATATATTCATATATATTTATXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence 
*kihl*KYITFFFIINNFKNFNMFRQLNKTTTKNFMLSLRGTTVRSVSTGGYYKSNEELD
KIKKQDLPDERVNEIIRQAEEQKTHGLSSIETEGAANIHKAQKKIKKMVPKDVEKFD*k*
fifniihilvi**hfpsfffkniysyif---
Translated Amino Acid sequence (All Frames) 
Frame A:
ikkyiyrni*lffl*liiskilicldn*ikqqqrilcsh*eellldlfqlediikvmkn*
ik*rnkiflmkelmk*sdklknkrhmd*vqlklkvqqisirlkrkskrwfqkmlkslikn
nlfst*fiy**ynnishlfflkiyihiyl---


Frame B:
lkntfieiynfffyn**fqkf*yv*tik*nnnkefyaliernyc*icfnwril*k**rir
*nketrss**ks**nnqts*rtkdtwikfn*n*rcskyp*gskenqkdgskrc*kv*lki
iyfqhnsyisniitfpifff*kyifiyi---


Frame C:
*kihl*KYITFFFIINNFKNFNMFRQLNKTTTKNFMLSLRGTTVRSVSTGGYYKSNEELD
KIKKQDLPDERVNEIIRQAEEQKTHGLSSIETEGAANIHKAQKKIKKMVPKDVEKFD*k*
fifniihilvi**hfpsfffkniysyif---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD425 (VSD425Q) /CSM/VS/VSD4-B/VSD425Q.Seq.d/                        545   e-154
SSI809 (SSI809Q) /CSM/SS/SSI8-A/SSI809Q.Seq.d/                        545   e-154
VSK283 (VSK283Q) /CSM/VS/VSK2-D/VSK283Q.Seq.d/                        539   e-152
SSM769 (SSM769Q) /CSM/SS/SSM7-C/SSM769Q.Seq.d/                        523   e-148
SSH462 (SSH462Q) /CSM/SS/SSH4-C/SSH462Q.Seq.d/                        507   e-143
SSB680 (SSB680Q) /CSM/SS/SSB6-D/SSB680Q.Seq.d/                        486   e-136
SSM422 (SSM422Q) /CSM/SS/SSM4-A/SSM422Q.Seq.d/                        416   e-115
SSM414 (SSM414Q) /CSM/SS/SSM4-A/SSM414Q.Seq.d/                        416   e-115
AHM717 (AHM717Q) /CSM/AH/AHM7-A/AHM717Q.Seq.d/                         46   5e-04
VHA477 (VHA477Q) /CSM/VH/VHA4-D/VHA477Q.Seq.d/                         42   0.007
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  1e-07  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  3e-04  6
AX345224|AX345224.1 Sequence 295 from Patent WO0200928.           32  4e-04  5
AX251768|AX251768.1 Sequence 29 from Patent WO0168911.            32  4e-04  5
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    38  5e-04  7
AL034558|AL034558.3 Plasmodium falciparum MAL3P2.                 36  6e-04  7
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          42  0.002  7
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    42  0.002  4
AC068735|AC068735.2 Homo sapiens clone RP11-594J3, WORKING DRAFT SEQUENCE, 27 unordered pieces.    42  0.004  8
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete sequence.    36  0.004  6
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FP236842_1978(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    39   0.072
A97942(A97942) metalloproteinase (EC 3.4.21.-) A [imported] - St...    35   1.0
CR380956_29(CR380956|pid:none) Candida glabrata strain CBS138 ch...    34   1.4
CP000936_684(CP000936|pid:none) Streptococcus pneumoniae Hungary...    34   1.8
(Q73MX5) RecName: Full=V-type ATP synthase subunit E; AltName: F...    33   2.3
AM285311_54(AM285311|pid:none) Spiroplasma citri GII3-3X chromos...    33   3.0
CP000552_920(CP000552|pid:none) Prochlorococcus marinus str. MIT...    33   3.0
protein update 2009. 6.13
PSORT 

 psg: 0.97  gvh: 0.47  alm: 0.49  top: 0.67  tms: 0.00  mit: 0.47  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for SSI809 is mit
5' end seq. ID SSI809F
5' end seq. 
>SSI809F.Seq
ATTAAAAAATACATTTATAGAAATATATAACTTTTTTTTTTATAATTAATAATTTCAAAA
ATTTTAATATGTTTAGACAATTAAATAAAACAACAACAAAGAATTTTATGCTCTCATTGA
GAGGAACTACTGTTAGATCTGTTTCAACTGGAGGATATTATAAAAGTAATGAAGAATTAG
ATAAAATAAAGAAACAAGATCTTCCTGATGAAAGAGTTAATGAAATAATCAGACAAGCTG
AAGAACAAAAGACACATGGATTAAGTTCAATTGAAACTGAAGGTGCAGCAAATATCCATA
AGGCTCAAAAGAAAATCAAAAAGATGGTTCCAAAAGATGTTGAAAAGTTTGATTAAAAAT
AATTTATTTTCAACATAATTCATATATTAGTAATATAATAACATTTCCCATCTTTTTTTT
TTAAAAATATATATTCATATATATTTAT----------
Length of 5' end seq. 448
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -