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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ155
Library SS
(Link to library)
Clone ID SSJ155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01696-1|Contig-U15618-1
Original site URL
Representative seq. ID SSJ155P
(Link to Original site)
Representative DNA sequence 
>SSJ155 (SSJ155Q) /CSM/SS/SSJ1-C/SSJ155Q.Seq.d/
TTTAAAAATTAAATATTTAAAAACTAAAAATAAAATAATTATATATTTATATAAAATTAA
ATTAAATTAAATTAAATTAAATAAAATAAAATAAAATAAACAAAATAAAATAAAATAAAA
TAAAATGATACAATCTACAAACACAAACACTCCTTTACCATATGAATTAAATTTAAAAGC
CACTAGCGATATATATAATACAATTTTTAAACCAAAAGAAAGACAAGGCAGATATTTCAT
AATTTCAAAATATGATTGTAATAATTCAGTTGATGATGTTAAAATGTTTGATATGGATAT
CTTGGAATATTATCCAATTGAATTAAGTATGCAATATTTATTGAACAAATATCCAAACTT
CAAAATTCATTATTTTTTATTAATAAAAGACTATCAATATTATCTTTACGATAAAGACTG
TGCCACCTTAGAAATTCAACCAGTGATTAAATTTAACTGAAAATAATATCTAXXXXXXXX
XXAGTGGTGAATATGTCTTAGAGGGATCCACAACTGGGGTATTAGTTTTTTGGTAACATA
ACCCTGTTTCTCCAGGCCCTGTCTCTCGTAAATATCCCCCATTAATTGGGGATGGTAAGG
GAATTAATTTCAGAGACTCAAATTCATTTCTTTTAAGGGATAATCAAAATAATGATCAGT
CAAATTCTTCCCCGGATTTTAAATTTATAATTGAACCTAAGGATAAATTTGGTAACAATA
ATCAAAATTCAAATAGTATTAATGATTTCAAATTTTATTTAAGAAAATCATTATC
sequence update 1998.12.21
Translated Amino Acid sequence 
*klni*klkik*lyiyikln*ikln*ik*nkinkik*nkik*ynlqtqtllyhmn*i*kp
laiyiiqflnqkkdkadis*fqnmiviiqlmmlkcliwiswniiqln*vcniy*tniqts
kfiify**ktiniiftiktvpp*kfnq*LNLTENNI---

---SGEYVLEGSTTGVLVFW*hnpvspgpvsrkyppligdgkginfrdsnsfllrdnqnn
dqsnsspdfkfiiepkdkfgnnnqnsnsindfkfylrksl
Translated Amino Acid sequence (All Frames) 
Frame A:
fkn*ifkn*k*nnyifi*n*ikln*ik*nkik*tk*nkik*ndtiykhkhsfti*ikfks
h*ryi*ynf*tkrktrqifhnfki*l**fs**c*nv*ygylgilsn*ikyaifieqiskl
qnslffinkrlsilslr*rlchlrnstsd*i*lkiis---

---SGEYVLEGSTTGVLVFW*hnpvspgpvsrkyppligdgkginfrdsnsfllrdnqnn
dqsnsspdfkfiiepkdkfgnnnqnsnsindfkfylrksl

Frame B:
lkikylktknkiiiylykikln*iklnkik*nkqnkik*nkmiqstntntplpyelnlka
tsdiyntifkpkerqgryfiiskydcnnsvddvkmfdmdileyypielsmqyllnkypnf
kihyfllikdyqyylydkdcatleiqpvikfn*k*yl---

---vvnms*rdpqlgy*ffgnitlflqalslvniph*lgmvrelisetqihff*giikim
isqilprilnl*lnlrinlvtiikiqivlmisnfi*enhy

Frame C:
*klni*klkik*lyiyikln*ikln*ik*nkinkik*nkik*ynlqtqtllyhmn*i*kp
laiyiiqflnqkkdkadis*fqnmiviiqlmmlkcliwiswniiqln*vcniy*tniqts
kfiify**ktiniiftiktvpp*kfnq*LNLTENNI---

---w*iclrgihnwgisflvt*pcfsrpcls*ispinwgw*gn*fqrlkfisfkg*sk**
svkffpgf*iyn*t*g*iw*q*skfk*y**fqilfkkiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ155 (SSJ155Q) /CSM/SS/SSJ1-C/SSJ155Q.Seq.d/                       1227   0.0
SSA684 (SSA684Q) /CSM/SS/SSA6-D/SSA684Q.Seq.d/                        678   0.0
SSE573 (SSE573Q) /CSM/SS/SSE5-D/SSE573Q.Seq.d/                        494   e-138
SSM766 (SSM766Q) /CSM/SS/SSM7-C/SSM766Q.Seq.d/                        313   2e-84
SSC634 (SSC634Q) /CSM/SS/SSC6-B/SSC634Q.Seq.d/                        242   7e-63
VSI366 (VSI366Q) /CSM/VS/VSI3-C/VSI366Q.Seq.d/                         44   0.003
VHL886 (VHL886Q) /CSM/VH/VHL8-D/VHL886Q.Seq.d/                         40   0.049
SHK810 (SHK810Q) /CSM/SH/SHK8-A/SHK810Q.Seq.d/                         40   0.049
SHI845 (SHI845Q) /CSM/SH/SHI8-B/SHI845Q.Seq.d/                         40   0.049
SHE183 (SHE183Q) /CSM/SH/SHE1-D/SHE183Q.Seq.d/                         40   0.049
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   6e-09  20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   1e-08  16
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    36   6e-08  17
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    38   7e-07  17
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32   2e-06  16
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    36   4e-06  19
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   7e-06  25
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    36   8e-06  16
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   1e-05  14
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   2e-05  12
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR628337_535(CR628337|pid:none) Legionella pneumophila str. Lens...    34   4.4
CP000246_1750(CP000246|pid:none) Clostridium perfringens ATCC 13...    34   4.4
BA000016_1538(BA000016|pid:none) Clostridium perfringens str. 13...    34   4.4
CP000675_553(CP000675|pid:none) Legionella pneumophila str. Corb...    34   4.4
AY525762_2(AY525762|pid:none) Aspergillus tubingensis NADH dehyd...    34   5.8
EF494739_11(EF494739|pid:none) Blastocystis sp. DMP/02-328 mitoc...    33   7.6
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ155 is nuc
5' end seq. ID SSJ155F
5' end seq. 
>SSJ155F.Seq
TTTAAAAATTAAATATTTAAAAACTAAAAATAAAATAATTATATATTTATATAAAATTAA
ATTAAATTAAATTAAATTAAATAAAATAAAATAAAATAAACAAAATAAAATAAAATAAAA
TAAAATGATACAATCTACAAACACAAACACTCCTTTACCATATGAATTAAATTTAAAAGC
CACTAGCGATATATATAATACAATTTTTAAACCAAAAGAAAGACAAGGCAGATATTTCAT
AATTTCAAAATATGATTGTAATAATTCAGTTGATGATGTTAAAATGTTTGATATGGATAT
CTTGGAATATTATCCAATTGAATTAAGTATGCAATATTTATTGAACAAATATCCAAACTT
CAAAATTCATTATTTTTTATTAATAAAAGACTATCAATATTATCTTTACGATAAAGACTG
TGCCACCTTAGAAATTCAACCAGTGATTAAATTTAACTGAAAATAATATCTA--------
--
Length of 5' end seq. 472
3' end seq. ID SSJ155Z
3' end seq. 
>SSJ155Z.Seq
----------AGTGGTGAATATGTCTTAGAGGGATCCACAACTGGGGTATTAGTTTTTTG
GTAACATAACCCTGTTTCTCCAGGCCCTGTCTCTCGTAAATATCCCCCATTAATTGGGGA
TGGTAAGGGAATTAATTTCAGAGACTCAAATTCATTTCTTTTAAGGGATAATCAAAATAA
TGATCAGTCAAATTCTTCCCCGGATTTTAAATTTATAATTGAACCTAAGGATAAATTTGG
TAACAATAATCAAAATTCAAATAGTATTAATGATTTCAAATTTTATTTAAGAAAATCATT
ATC
Length of 3' end seq. 293
Connected seq. ID SSJ155P
Connected seq. 
>SSJ155P.Seq
TTTAAAAATTAAATATTTAAAAACTAAAAATAAAATAATTATATATTTATATAAAATTAA
ATTAAATTAAATTAAATTAAATAAAATAAAATAAAATAAACAAAATAAAATAAAATAAAA
TAAAATGATACAATCTACAAACACAAACACTCCTTTACCATATGAATTAAATTTAAAAGC
CACTAGCGATATATATAATACAATTTTTAAACCAAAAGAAAGACAAGGCAGATATTTCAT
AATTTCAAAATATGATTGTAATAATTCAGTTGATGATGTTAAAATGTTTGATATGGATAT
CTTGGAATATTATCCAATTGAATTAAGTATGCAATATTTATTGAACAAATATCCAAACTT
CAAAATTCATTATTTTTTATTAATAAAAGACTATCAATATTATCTTTACGATAAAGACTG
TGCCACCTTAGAAATTCAACCAGTGATTAAATTTAACTGAAAATAATATCTA--------
--AGTGGTGAATATGTCTTAGAGGGATCCACAACTGGGGTATTAGTTTTTTGGTAACATA
ACCCTGTTTCTCCAGGCCCTGTCTCTCGTAAATATCCCCCATTAATTGGGGATGGTAAGG
GAATTAATTTCAGAGACTCAAATTCATTTCTTTTAAGGGATAATCAAAATAATGATCAGT
CAAATTCTTCCCCGGATTTTAAATTTATAATTGAACCTAAGGATAAATTTGGTAACAATA
ATCAAAATTCAAATAGTATTAATGATTTCAAATTTTATTTAAGAAAATCATTATC
Length of connected seq. 765
Full length Seq ID -
Full length Seq. -
Length of full length seq. -