>SSJ469 (SSJ469Q) /CSM/SS/SSJ4-C/SSJ469Q.Seq.d/
TTTATCTAAAAATTAAATTTGAAAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
TATAATTAAATAATAATTAATTTATTACAATAAAAAAAGAAAAAAAATGAGATTATTAGC
AGCATTTCTTTTAGTTATTTATGCAGCACATAATGGAGTATTTGCAAGAGATCATATTGT
TTCATTATCAAAAGGTGAAAGTTTTGAATTAAATATTGAACAAGGTGATAGAATTAATTT
CCATGTAAGAGATAATAATAAACATGTTTTAACCATTCAAGGAGAATCTCAATCATTTGC
AAACCTTTCTCCAAAAGATTCTGCCAAGCAACAATTTAATGAAGCTGGTGAATTCATTGT
TACCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAGA
TCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAA
AGATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGA
AAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAA
ACCATCATCAAATGTTAGTGXXXXXXXXXX

lskn*i*kfltkkkkkkkkniik**LIYYNKKRKKMRLLAAFLLVIYAAHNGVFARDHIV
SLSKGESFELNIEQGDRINFHVRDNNKHVLTIQGESQSFANLSPKDSAKQQFNEAGEFIV
TDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNE
NAKPNSAATKDSNTANNKAKPSSNVS---

Frame A:
fi*klnlkvfnkkkkkkkkkyn*iiinllq*kkkkneiissisfsylcst*wsickrsyc
fiikr*kf*iky*tr**n*fpckr***tcfnhsrrisiickpfskrfcqati**sw*ihc
yrfs*ylcq*gysksktttrstkmv*kgc*rscqqngsn*rygtt*t*gspkyk*cskq*
kc*tkfsshqrfkyr*q*s*tiikc*---


Frame B:
lskn*i*kfltkkkkkkkkniik**LIYYNKKRKKMRLLAAFLLVIYAAHNGVFARDHIV
SLSKGESFELNIEQGDRINFHVRDNNKHVLTIQGESQSFANLSPKDSAKQQFNEAGEFIV
TDSANIYVNKVIVSQKQQQDQQKWFEKDAKDHANKMAATKDMEQHEHEDLQNTNDAQNNE
NAKPNSAATKDSNTANNKAKPSSNVS---


Frame C:
ylkikfesf*qkkkkkkkki*lnnn*fitikkekk*dy*qhff*lfmqhimeylqeiilf
hyqkvkvln*ilnkvielism*eiiinmf*pfkenlnhlqtflqkilpsnnlmklvnsll
piqlismsirl**vknnnkinknglkrmlkimptkwqqlkiwnnmnmriskiqmmlktmk
mlnqiqqppkiqipltiklnhhqml---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK138 (SSK138Q) /CSM/SS/SSK1-B/SSK138Q.Seq.d/                       1017   0.0
SSJ469 (SSJ469Q) /CSM/SS/SSJ4-C/SSJ469Q.Seq.d/                       1017   0.0
SLC285 (SLC285Q) /CSM/SL/SLC2-D/SLC285Q.Seq.d/                       1017   0.0
SLC228 (SLC228Q) /CSM/SL/SLC2-B/SLC228Q.Seq.d/                       1017   0.0
CHR152 (CHR152Q) /CSM/CH/CHR1-C/CHR152Q.Seq.d/                       1017   0.0
CHE847 (CHE847Q) /CSM/CH/CHE8-B/CHE847Q.Seq.d/                       1017   0.0
CHP272 (CHP272Q) /CSM/CH/CHP2-C/CHP272Q.Seq.d/                       1011   0.0
SSA113 (SSA113Q) /CSM/SS/SSA1-A/SSA113Q.Seq.d/                       1001   0.0
CHD680 (CHD680Q) /CSM/CH/CHD6-D/CHD680Q.Seq.d/                        961   0.0
CHB182 (CHB182Q) /CSM/CH/CHB1-D/CHB182Q.Seq.d/                        961   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   1e-09  17
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   5e-07  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   3e-06  16
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   5e-06  16
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             34   1e-05  17
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   7e-05  12
BX537168|BX537168.4 Zebrafish DNA sequence from clone DKEY-105O6 in linkage group 4.    34   8e-05  10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36   8e-05  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    34   1e-04  13
BX663522|BX663522.7 Zebrafish DNA sequence from clone CH211-261E11 in linkage group 18.    34   1e-04  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK067892_1(AK067892|pid:none) Oryza sativa Japonica Group cDNA c...    38   0.20
AE014188_26(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    38   0.20
AE014186_398(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.35
AE001362_162(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.35
AL035476_66(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    37   0.45
AL844509_281(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.0
AL844504_192(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.0
AL034558_26(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    36   1.0
CR382121_19(CR382121|pid:none) Kluyveromyces lactis strain NRRL ...    36   1.0
BC169997_1(BC169997|pid:none) Xenopus laevis RPGR, mRNA (cDNA cl...    35   1.3

 psg: 0.82  gvh: 0.65  alm: 0.30  top: 0.20  tms: 0.07  mit: 0.36  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.77  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 20.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SSJ469 is cyt

>SSJ469F.Seq
TTTATCTAAAAATTAAATTTGAAAGTTTTTAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
TATAATTAAATAATAATTAATTTATTACAATAAAAAAAGAAAAAAAATGAGATTATTAGC
AGCATTTCTTTTAGTTATTTATGCAGCACATAATGGAGTATTTGCAAGAGATCATATTGT
TTCATTATCAAAAGGTGAAAGTTTTGAATTAAATATTGAACAAGGTGATAGAATTAATTT
CCATGTAAGAGATAATAATAAACATGTTTTAACCATTCAAGGAGAATCTCAATCATTTGC
AAACCTTTCTCCAAAAGATTCTGCCAAGCAACAATTTAATGAAGCTGGTGAATTCATTGT
TACCGATTCAGCTAATATCTATGTCAATAAGGTTATAGTAAGTCAAAAACAACAACAAGA
TCAACAAAAATGGTTTGAAAAGGATGCTAAAGATCATGCCAACAAAATGGCAGCAACTAA
AGATATGGAACAACATGAACATGAGGATCTCCAAAATACAAATGATGCTCAAAACAATGA
AAATGCTAAACCAAATTCAGCAGCCACCAAAGATTCAAATACCGCTAACAATAAAGCTAA
ACCATCATCAAATGTTAGTG----------