>SSJ784 (SSJ784Q) /CSM/SS/SSJ7-D/SSJ784Q.Seq.d/
ATTTCAAATAGTTTCAGTTCAAAAAGAATTCAAGATGATGGTATTAATCTATCAAGTTCT
TCAAATTCAATAAATAACAATAGTTCTAAAAAAGAACAACCAACTTTACCAATAATTCAA
AATAATTCAAATATTAATAATGGTAATAATATTAATAATAGCGGTAATACTAATAATAGT
GTTAATAATATGAATATTAACAATACTAATAGTAATAATAATAATAATAATAATAATAAT
AATAATANTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAGTATTAACACTGGTAATAATAATAATAATAATAATAATACCAAT
AATAATAATGTTAATAATAATAGTAACAATAATAATAATACCAATAATAATAATAATAAT
AATAAXXXXXXXXXX

ISNSFSSKRIQDDGINLSSSSNSINNNSSKKEQPTLPIIQNNSNINNGNNINNSGNTNNS
VNNMNINNTNSNNNNNNNNNNNXSNNNNNNNNNNNNNNNNNNNNNSINTGNNNNNNNNTN
NNNVNNNSNNNNNTNNNNNNN---

Frame A:
ISNSFSSKRIQDDGINLSSSSNSINNNSSKKEQPTLPIIQNNSNINNGNNINNSGNTNNS
VNNMNINNTNSNNNNNNNNNNNXSNNNNNNNNNNNNNNNNNNNNNSINTGNNNNNNNNTN
NNNVNNNSNNNNNTNNNNNNN---


Frame B:
fqivsvqkefkmmvliyqvlqiq*itivlkknnqlyq*fkiiqilimviiliiaviliiv
lii*iltiliviiiiiiiiiiixviiiiiiiiiiiiiiiiiiiiivltlviiiiiiiipi
iimliiivtiiiipiiiiiii---


Frame C:
fk*fqfkknsr*wy*sikffkfnk*q*f*krttnftnnsk*fky**w**y***r*y***c
**yey*qy*************x***********************y*hw********yq*
**c*****q***yq******---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ784 (SSJ784Q) /CSM/SS/SSJ7-D/SSJ784Q.Seq.d/                        216   2e-55
SSL865 (SSL865Q) /CSM/SS/SSL8-C/SSL865Q.Seq.d/                        212   3e-54
CHR149 (CHR149Q) /CSM/CH/CHR1-C/CHR149Q.Seq.d/                         42   0.007
VSE133 (VSE133Q) /CSM/VS/VSE1-B/VSE133Q.Seq.d/                         36   0.42
VFN410 (VFN410Q) /CSM/VF/VFN4-A/VFN410Q.Seq.d/                         36   0.42
VFF236 (VFF236Q) /CSM/VF/VFF2-B/VFF236Q.Seq.d/                         36   0.42
AFE142 (AFE142Q) /CSM/AF/AFE1-B/AFE142Q.Seq.d/                         36   0.42
AFC765 (AFC765Q) /CSM/AF/AFC7-C/AFC765Q.Seq.d/                         36   0.42
VFI441 (VFI441Q) /CSM/VF/VFI4-B/VFI441Q.Seq.d/                         34   1.7
VFI389 (VFI389Q) /CSM/VF/VFI3-D/VFI389Q.Seq.d/                         34   1.7

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ584649|AJ584649.1 Methanosphaera stadtmanae mtaA, mtaB and mtaC genes.    40   0.77   2
BH704912|BH704912.1 BOMAC27TF BO_2_3_KB Brassica oleracea genomic clone BOMAC27, DNA sequence.    44   1.6    1
BH499616|BH499616.1 BOGPD04TF BOGP Brassica oleracea genomic clone BOGPD04, DNA sequence.    44   1.6    1
BH928610|BH928610.1 odh96f02.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   1.6    1
BH562268|BH562268.1 BOGBY59TR BOGB Brassica oleracea genomic clone BOGBY59, DNA sequence.    44   1.6    1
BH477836|BH477836.1 BOGZZ52TR BOGZ Brassica oleracea genomic clone BOGZZ52, DNA sequence.    44   1.6    1
BH977355|BH977355.1 odf82f01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   1.6    1
CC954391|CC954391.1 BOIFA88TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFA88, genomic survey sequence.    44   1.6    1
BZ494726|BZ494726.1 BONHC50TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONHC50, DNA sequence.    44   1.6    1
BZ058598|BZ058598.1 lky34d08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   1.6    1

 ***** No hits found ******

Lambda     K      H
   0.308    0.129    0.341

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 117,024,761

 psg: 0.58  gvh: 0.30  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSJ784 is nuc

>SSJ784F.Seq
ATTTCAAATAGTTTCAGTTCAAAAAGAATTCAAGATGATGGTATTAATCTATCAAGTTCT
TCAAATTCAATAAATAACAATAGTTCTAAAAAAGAACAACCAACTTTACCAATAATTCAA
AATAATTCAAATATTAATAATGGTAATAATATTAATAATAGCGGTAATACTAATAATAGT
GTTAATAATATGAATATTAACAATACTAATAGTAATAATAATAATAATAATAATAATAAT
AATAATANTAGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAGTATTAACACTGGTAATAATAATAATAATAATAATAATACCAAT
AATAATAATGTTAATAATAATAGTAACAATAATAATAATACCAATAATAATAATAATAAT
AATAA----------