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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK377
Library SS
(Link to library)
Clone ID SSK377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09469-1
Original site URL
Representative seq. ID SSK377F
(Link to Original site)
Representative DNA sequence 
>SSK377 (SSK377Q) /CSM/SS/SSK3-D/SSK377Q.Seq.d/
TATCAAGGTCCTGATTCTGGTGAAAACCCAAGTAATTCTCCAATTATTAATTTTGGTTTC
AATTTAATAATTTTGATTATATTTATAAATTTTATTTTCTTTATTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATTAATGGAATTCTATTAAATTAATGTATATATAAAAATAAAATTT
ATTTATTTATTTATTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXX
XXXXXXX
sequence update 1998.11.19
Translated Amino Acid sequence 
YQGPDSGENPSNSPIINFGFNLIILIIFINFIFFI*kkkkkkkkklmefy*invyikikf
iylfilfekkkkkkkkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
YQGPDSGENPSNSPIINFGFNLIILIIFINFIFFI*kkkkkkkkklmefy*invyikikf
iylfilfekkkkkkkkkk---


Frame B:
ikvlilvktqvilqllilvsi**f*lyl*ilfslfkkkkkkkkkn*wnsiklmyi*k*nl
fiylfyskkkkkkkkkkk---


Frame C:
srs*fw*kpk*fsny*fwfqfnnfdyiykfyflylkkkkkkkkkingilln*ciyknkiy
lfiyfirkkkkkkkkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK377 (SSK377Q) /CSM/SS/SSK3-D/SSK377Q.Seq.d/                         64   1e-09
SSK243 (SSK243Q) /CSM/SS/SSK2-B/SSK243Q.Seq.d/                         64   1e-09
SSC157 (SSC157Q) /CSM/SS/SSC1-C/SSC157Q.Seq.d/                         56   3e-07
VFL266 (VFL266Q) /CSM/VF/VFL2-C/VFL266Q.Seq.d/                         42   0.004
VFA767 (VFA767Q) /CSM/VF/VFA7-C/VFA767Q.Seq.d/                         40   0.015
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    64   9e-07  1
dna update 2003. 8. 5
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 190,179,550
protein update 2009. 6.14
PSORT 

 psg: 0.75  gvh: 0.30  alm: 0.18  top: 0.60  tms: 0.07  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSK377 is nuc
5' end seq. ID SSK377F
5' end seq. 
>SSK377F.Seq
TATCAAGGTCCTGATTCTGGTGAAAACCCAAGTAATTCTCCAATTATTAATTTTGGTTTC
AATTTAATAATTTTGATTATATTTATAAATTTTATTTTCTTTATTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAATTAATGGAATTCTATTAAATTAATGTATATATAAAAATAAAATTT
ATTTATTTATTTATTTTATTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---
-------
Length of 5' end seq. 237
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -