>SSL262 (SSL262Q) /CSM/SS/SSL2-C/SSL262Q.Seq.d/
XXXXXXXXXXCATACAACAGTGATCGTTTCACCAACTCCAGTTGTTTATCAATCAGGTTC
ACAACATTATGCTCCATACCAACCACAACCATACTATGCTCAACAACCAATTCAACCACA
ACAACAACAATNTTATCAACAACCATACCAACAACAACAATATCAACCACAACCATACCA
ACCAAATTCTCCACAATATCAACCATAAAATAGTGTTTTTTTTTAAAAAAAAAAAAAAAA
AAAAACAATAACAAAATAATATATTTTTAAAATCGAAAAGAAACAAAAAAAAAAGTTTTA
TTATTATTTAAATAAATCTTTAGGTTTTAAAATTTTGTACACTGATAAACAAAAAATAAA
ACCCATATTAAAAAAAAAAAAACA

---iqq*SFHQLQLFINQVHNIMLHTNHNHTMLNNQFNHNNNNXINNHTNNNNINHNHTN
QILHNINHKIVFFFKKKKKKKQ*qnniflkskrnkkksfiii*inl*vlkfctlinkk*n
py*kkkn

Frame A:
---iqq*SFHQLQLFINQVHNIMLHTNHNHTMLNNQFNHNNNNXINNHTNNNNINHNHTN
QILHNINHKIVFFFKKKKKKKQ*qnniflkskrnkkksfiii*inl*vlkfctlinkk*n
py*kkkn


Frame B:
---ynsdrftnssclsirfttlcsiptttilcsttnstttttxlsttiptttistttipt
kfstistik*cfflkkkkkknnnkiiyf*nrketkkkvlllfk*ifrf*nfvh**tknkt
hikkkkt


Frame C:
---ttvivsptpvvyqsgsqhyapyqpqpyyaqqpiqpqqqqxyqqpyqqqqyqpqpyqp
nspqyqp*nsvff*kkkkkktitk*yifkiekkqkkkfyyylnkslgfkilytdkqkikp
ilkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL262 (SSL262Q) /CSM/SS/SSL2-C/SSL262Q.Seq.d/                        186   2e-46
SSI164 (SSI164Q) /CSM/SS/SSI1-C/SSI164Q.Seq.d/                        186   2e-46
SSH391 (SSH391Q) /CSM/SS/SSH3-D/SSH391Q.Seq.d/                        186   2e-46
SSE719 (SSE719Q) /CSM/SS/SSE7-A/SSE719Q.Seq.d/                        186   2e-46
SSB344 (SSB344Q) /CSM/SS/SSB3-B/SSB344Q.Seq.d/                        186   2e-46
VSD409 (VSD409Q) /CSM/VS/VSD4-A/VSD409Q.Seq.d/                         42   0.006
VSD407 (VSD407Q) /CSM/VS/VSD4-A/VSD407Q.Seq.d/                         42   0.006
VSC266 (VSC266Q) /CSM/VS/VSC2-C/VSC266Q.Seq.d/                         42   0.006
VSB883 (VSB883Q) /CSM/VS/VSB8-D/VSB883Q.Seq.d/                         42   0.006
VSA659 (VSA659Q) /CSM/VS/VSA6-C/VSA659Q.Seq.d/                         42   0.006

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX348350|AX348350.1 Sequence 45 from Patent WO0202806.            36  1e-04  4
AX344631|AX344631.1 Sequence 56 from Patent WO0200927.            42  6e-04  3
AX323540|AX323540.1 Sequence 28 from Patent WO0192565.            42  6e-04  3
AX277857|AX277857.1 Sequence 20 from Patent WO0177375.            42  6e-04  3
AE001398|AE001398.1 Plasmodium falciparum chromosome 2, section 35 of 73 of the complete sequence.    40  0.003  3
CF206883|CF206883.1 RR890915I0007_IVc_rc_E07 Vitis sp. RR890915I Vitis hybrid cultivar cDNA clone RR890915I0007_IVc_rc_E07, mRNA sequence.    42  0.009  2
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36  0.029  4
BH448822|BH448822.1 BOHJH25TR BOHJ Brassica oleracea genomic clone BOHJH25, DNA sequence.    38  0.055  2
AC004563|AC004563.1 Drosophila melanogaster DNA sequence (P1 DS06300 (D178)), complete sequence.    38  0.058  3
AX345695|AX345695.1 Sequence 766 from Patent WO0200928.           36  0.066  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 177,566,960

 psg: 0.75  gvh: 0.32  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 32.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SSL262 is nuc

>SSL262Z.Seq
----------CATACAACAGTGATCGTTTCACCAACTCCAGTTGTTTATCAATCAGGTTC
ACAACATTATGCTCCATACCAACCACAACCATACTATGCTCAACAACCAATTCAACCACA
ACAACAACAATNTTATCAACAACCATACCAACAACAACAATATCAACCACAACCATACCA
ACCAAATTCTCCACAATATCAACCATAAAATAGTGTTTTTTTTTAAAAAAAAAAAAAAAA
AAAAACAATAACAAAATAATATATTTTTAAAATCGAAAAGAAACAAAAAAAAAAGTTTTA
TTATTATTTAAATAAATCTTTAGGTTTTAAAATTTTGTACACTGATAAACAAAAAATAAA
ACCCATATTAAAAAAAAAAAAACA