>SSL341 (SSL341Q) /CSM/SS/SSL3-B/SSL341Q.Seq.d/
XXXXXXXXXXTCATAACGTGTTGTTTATTTAAAAATCCNGCCCAAAGAATTTCTTGGAAT
GAAATAGTTAATCATTCATTCTTTAAAAATTAAAATTAATTGTACNTAAATTTAAAAAAA
AAAAAAAAAAAACTTTAAATTTTTTAAAAACATATTTTAAAAAAAGAAATAATACAAAAA
AACTTTAAATTTTCTATACNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGA
AAAAAAATAAAAAAAAA

---itcclfknpaqriswneivnhsffkn*n*lyxnlkkkkkkl*if*KHILKKEIIQKN
FKFSIXEKKKKKKKKKKKRKKIKK

Frame A:
---hnvlfi*ksxpknfle*ns*sfil*klklivxkfkkkkkktlnflktyfkkrnntkk
l*ifyt*kkkkkkkkkkekkknkkk


Frame B:
---itcclfknpaqriswneivnhsffkn*n*lyxnlkkkkkkl*if*KHILKKEIIQKN
FKFSIXEKKKKKKKKKKKRKKIKK


Frame C:
---*rvvylkixpkeflgmk*liihslkikinct*i*kkkkknfkffknif*kkk*ykkt
lnflyxkkkkkkkkkkrkekk*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL341 (SSL341Q) /CSM/SS/SSL3-B/SSL341Q.Seq.d/                        192   2e-48
SSM661 (SSM661Q) /CSM/SS/SSM6-C/SSM661Q.Seq.d/                        188   3e-47
SSM259 (SSM259Q) /CSM/SS/SSM2-C/SSM259Q.Seq.d/                        188   3e-47
SSK345 (SSK345Q) /CSM/SS/SSK3-B/SSK345Q.Seq.d/                        188   3e-47
SSJ526 (SSJ526Q) /CSM/SS/SSJ5-B/SSJ526Q.Seq.d/                        188   3e-47
SSH124 (SSH124Q) /CSM/SS/SSH1-A/SSH124Q.Seq.d/                        188   3e-47
SSF473 (SSF473Q) /CSM/SS/SSF4-D/SSF473Q.Seq.d/                        188   3e-47
SSF331 (SSF331Q) /CSM/SS/SSF3-B/SSF331Q.Seq.d/                        188   3e-47
SSD768 (SSD768Q) /CSM/SS/SSD7-C/SSD768Q.Seq.d/                        188   3e-47
SSD754 (SSD754Q) /CSM/SS/SSD7-C/SSD754Q.Seq.d/                        188   3e-47

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF474333|AF474333.1 Dictyostelium discoideum ABC transporter ABCC.1 (abcC1) gene, complete cds.   188  2e-44  1
BH953847|BH953847.1 odi18a01.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    48  0.051  1
AC142263|AC142263.1 Mus musculus chromosome UNK clone RP24-449M10, WORKING DRAFT SEQUENCE, 6 unordered pieces.    46  0.20  1
AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.    42  0.74  2
AC094167|AC094167.9 Rattus norvegicus clone CH230-2F7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  0.80  1
AC105612|AC105612.4 Rattus norvegicus chromosome 18 clone CH230-226O12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.80  1
BB458166|BB458166.1 Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130055G15, 3' end partial sequence.    44  0.80  1
AW954895|AW954895.1 EST366965 MAGE resequences, MAGC Homo sapiens cDNA, mRNA sequence.    44  0.80  1
AL606756|AL606756.17 Mouse DNA sequence from clone RP23-265O19 on chromosome 3.    44  0.80  1
AL512292|AL512292.5 Human DNA sequence from clone RP11-292O17 on chromosome 1.    44  0.80  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54V82) RecName: Full=Probable inactive serine/threonine-protei...    62   8e-09
AP002525_22(AP002525|pid:none) Oryza sativa Japonica Group genom...    34   1.4
CR354547_2(CR354547|pid:none) Zebrafish DNA sequence from clone ...    33   4.1
CR936448_2(CR936448|pid:none) Zebrafish DNA sequence from clone ...    33   4.1
CR354547_1(CR354547|pid:none) Zebrafish DNA sequence from clone ...    33   4.1
CR354547_4(CR354547|pid:none) Zebrafish DNA sequence from clone ...    33   4.1
AY188756_1(AY188756|pid:none) Zea mays GCK-like kinase MIK mRNA,...    32   5.3
BT036822_1(BT036822|pid:none) Zea mays full-length cDNA clone ZM...    32   5.3
(Q5QN75) RecName: Full=Mitogen-activated protein kinase kinase 1...    32   6.9
BT044702_1(BT044702|pid:none) Salmo salar clone ssal-rgf-501-059...    32   6.9

 psg: 0.64  gvh: -0.00  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 1.02  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SSL341 is nuc

>SSL341Z.Seq
----------TCATAACGTGTTGTTTATTTAAAAATCCNGCCCAAAGAATTTCTTGGAAT
GAAATAGTTAATCATTCATTCTTTAAAAATTAAAATTAATTGTACNTAAATTTAAAAAAA
AAAAAAAAAAAACTTTAAATTTTTTAAAAACATATTTTAAAAAAAGAAATAATACAAAAA
AACTTTAAATTTTCTATACNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGA
AAAAAAATAAAAAAAAA