>SSL665 (SSL665Q) /CSM/SS/SSL6-C/SSL665Q.Seq.d/
XXXXXXXXXXGGAGNCGCTACAAATCTCCTTTTAGGAGCAGTCATTGGAACTAAATGGTC
TATTCATTCCATACCAGATCCAATTGGACCAATTCACATTCAGTTTAGCATCCTCTATAA
CTTATGGTATCAATAGAGGTGGCAATAATGGGAGACGGAGGTACAAAATATTGATCTGGA
CATACAAACTCAAAAACTGACAATACTCTTTACACTTGTTATTGCCTTCGTAGTTGTATC
TTTTGCATATGCTTGTATTATGCTTTTAATTACATTAGTTGCATTATTCAAACGTGTTCA
TAAAAAAAGGTAGAAAAGGCATTATTTGTTATGTCAATCTTGTTATGTATTTTCAATGTA
CTTTCAACTTTATTATTATTAAGATTAAACAAAGCACTCTGTGAGATGCCACTGATGGTC
TTTCATTACATATTCAATGGAGAAAAGTATCTTGATTCCTGGTATCTGTAGTAAATTCAA
GGGAAGTGATTCCCTCTTTTCTTGGGGTCCATCCATCGGTTGGTATTGCTCACTTGCAGC
TGCAATTGTCTCATTTATTACTATTTTCTTGACTTCTTCCATCTTACACACTCGTAAATT
CGGATATCATGTCATTCACTAAGACTCTTATGAGAGTTTAAAAAAAAAAAAAAAACTGGA
AAAAAAAAAAAAAATAATAATAATAAATCATTATTATATTTGTAAACTATAAAAATAAAT
AAAACAAAACAAAATAAAAT

---xatnlllgavigtkwsihsipdpigpihiqfsilynlwyq*rwq*wetevqnidldi
qtqkltilftlviafvvvsfayacimllitlvalfkrvhkkr*krhyllcqscyvfsmyf
qlyyy*d*tkhsvrch*WSFITYSMEKSILIPGICSKFKGSDSLFSWGPSIGWYCSLAAA
IVSFITIFLTSSILHTRKFGYHVIH*dsyeslkkkkklekkkkiiiinhyyickl*k*ik
qnkik

Frame A:
---exlqisf*eqslelnglfipyqiqldqftfslassityginrggnngrrrykiliwt
yklkn*qyslhlllps*lyllhmlvlcf*lh*lhysnvfikkgrkgiicyvnlvmyfqct
fnfiiikikqstl*datdglslhiqwrkvs*flvsvvnsrevipsflgvhpsvgiahlql
qlshlllfs*llpsytlvnsdimsftktlmrv*kkkknwkkkkk****iiiifvnyknk*
nktk*n


Frame B:
---xrykspfrsshwn*mvysfhtrsnwtnshsv*hpl*lmvsievaimgdggtky*sgh
tnsktdntlytcyclrscifciclyyafnyisciiqtcs*kkvekalfvmsillcifnvl
stllllrlnkalcemplmvfhyifngekyldswyl**iqgk*fplflgsihrlvlltcsc
ncliyyyfldffhlths*irischslrll*efkkkkktgkkkknnnnksllyl*tikink
tkqnk


Frame C:
---xatnlllgavigtkwsihsipdpigpihiqfsilynlwyq*rwq*wetevqnidldi
qtqkltilftlviafvvvsfayacimllitlvalfkrvhkkr*krhyllcqscyvfsmyf
qlyyy*d*tkhsvrch*WSFITYSMEKSILIPGICSKFKGSDSLFSWGPSIGWYCSLAAA
IVSFITIFLTSSILHTRKFGYHVIH*dsyeslkkkkklekkkkiiiinhyyickl*k*ik
qnkik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL665 (SSL665Q) /CSM/SS/SSL6-C/SSL665Q.Seq.d/                       1199   0.0
SSL692 (SSL692Q) /CSM/SS/SSL6-D/SSL692Q.Seq.d/                        817   0.0
SSL749 (SSL749Q) /CSM/SS/SSL7-C/SSL749Q.Seq.d/                        650   0.0
VSG636 (VSG636Q) /CSM/VS/VSG6-B/VSG636Q.Seq.d/                        597   e-169
SSA680 (SSA680Q) /CSM/SS/SSA6-D/SSA680Q.Seq.d/                        561   e-159
VFL193 (VFL193Q) /CSM/VF/VFL1-D/VFL193Q.Seq.d/                         38   0.19
SSM261 (SSM261Q) /CSM/SS/SSM2-C/SSM261Q.Seq.d/                         38   0.19
CFF645 (CFF645Q) /CSM/CF/CFF6-B/CFF645Q.Seq.d/                         38   0.19
AFH258 (AFH258Q) /CSM/AF/AFH2-C/AFH258Q.Seq.d/                         38   0.19
AFH252 (AFH252Q) /CSM/AF/AFH2-C/AFH252Q.Seq.d/                         38   0.19

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BB504737|BB504737.2 Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630049N15, 3' end partial sequence.    46  0.62  1
AC132250|AC132250.1 Mus musculus chromosome UNK clone RP24-443D23, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  1.9  3
AG080349|AG080349.1 Pan troglodytes DNA, clone: PTB-076H19.F.     44  2.4  1
AC144584|AC144584.1 Homo sapiens chromosome 5 clone RP11-1053P23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  3.8  6
AL024509|AL024509.1 Human DNA sequence from clone 522P13 on chromosome 6p21.31-22.3. Contains a 60S Ribosomal Protein L21 pseudogene and an HNRNP A3 (Heterogenous Nuclear Riboprotein A3, FBRNP) pseudogene. Contains ESTs, STSs and GSSs.    36  4.5  4
AC140165|AC140165.1 Homo sapiens chromosome 5 clone RP11-735A6, WORKING DRAFT SEQUENCE, 1 unordered piece.    38  4.7  5
AC025774|AC025774.5 Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence.    38  5.9  2
CD350207|CD350207.1 UI-M-FY0-cfl-p-06-0-UI.r1 NIH_BMAP_FY0 Mus musculus cDNA clone IMAGE:6851287 5', mRNA sequence.    34  7.2  2
AZ959249|AZ959249.1 2M0226A21R Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0226A21 R, DNA sequence.    34  7.4  2
AC139781|AC139781.1 Homo sapiens chromosome 5 clone RP11-1078M24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38  7.4  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P08) RecName: Full=Putative uncharacterized transmembrane pr...    35   1.9
CP001027_438(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch...    33   9.3

 psg: 0.92  gvh: 0.48  alm: 0.26  top: 0.70  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.17  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSL665 is nuc

>SSL665Z.Seq
----------GGAGNCGCTACAAATCTCCTTTTAGGAGCAGTCATTGGAACTAAATGGTC
TATTCATTCCATACCAGATCCAATTGGACCAATTCACATTCAGTTTAGCATCCTCTATAA
CTTATGGTATCAATAGAGGTGGCAATAATGGGAGACGGAGGTACAAAATATTGATCTGGA
CATACAAACTCAAAAACTGACAATACTCTTTACACTTGTTATTGCCTTCGTAGTTGTATC
TTTTGCATATGCTTGTATTATGCTTTTAATTACATTAGTTGCATTATTCAAACGTGTTCA
TAAAAAAAGGTAGAAAAGGCATTATTTGTTATGTCAATCTTGTTATGTATTTTCAATGTA
CTTTCAACTTTATTATTATTAAGATTAAACAAAGCACTCTGTGAGATGCCACTGATGGTC
TTTCATTACATATTCAATGGAGAAAAGTATCTTGATTCCTGGTATCTGTAGTAAATTCAA
GGGAAGTGATTCCCTCTTTTCTTGGGGTCCATCCATCGGTTGGTATTGCTCACTTGCAGC
TGCAATTGTCTCATTTATTACTATTTTCTTGACTTCTTCCATCTTACACACTCGTAAATT
CGGATATCATGTCATTCACTAAGACTCTTATGAGAGTTTAAAAAAAAAAAAAAAACTGGA
AAAAAAAAAAAAAATAATAATAATAAATCATTATTATATTTGTAAACTATAAAAATAAAT
AAAACAAAACAAAATAAAAT