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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSL680
Library SS
(Link to library)
Clone ID SSL680
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05804-1
Original site URL
Representative seq. ID SSL680Z
(Link to Original site)
Representative DNA sequence 
>SSL680 (SSL680Q) /CSM/SS/SSL6-D/SSL680Q.Seq.d/
XXXXXXXXXXTATCCAAGTTTATGGATCTTTATACATCCTTGTTCATTTAAAGTTTATTT
TATGTTTGAAGAATTAAATATACCTTATCAAACTTGTTTAGTAAATATTAGATCTGGTGA
ACATTTTAAAGGTGAGTTTGCAGAAATGTCACCAAATAATAAAATTCCAATGTTAATTGA
TAATACATATAGTGTCGACAGTGGTGATGATGATGAACCTTTAAAAATCTTTGAATCTGG
TGCAATTTTATTATACTTGGCAGAGAAATATCAAAAGTTTTTACCACCATTATCAAAACC
AAAAGAGAGATGTCAAGTTCAACAATGGCTATCATGGCAAATCTCGGAAATGCAACCAGC
TTTAACCTCTTATGTATATTATTTTATGATGGCACCAGAACCAGTTGCTTTTGGTATGGA
AAAAGCTGACCAAGATTTACACAAAATTTTAAAGGTTTTAGATAAACGTTTAGATGATGG
TAGAAAATATATTTGTAATGAATTTTCAATTGCTGATATAGCTTGCTTTGGTTTCGGTTC
TTATTTCAATTTAAATGTTTTCAAAGGTTGGAATAAATATGAAAATGTTGTACGTTGGGT
AAATACAATGTCTTCAAGACCTTCTATCTCTAAATTATTACCAATTGTTGAACAAACTTT
AAGAGTTAGAAAATTAAAAAGATTAGATAATCAAGAATTAGTACTTTAA
sequence update 1998. 1.31
Translated Amino Acid sequence 
---PSLWIFIHPCSFKVYFMFEELNIPYQTCLVNIRSGEHFKGEFAEMSPNNKIPMLIDN
TYSVDSGDDDEPLKIFESGAILLYLAEKYQKFLPPLSKPKERCQVQQWLSWQISEMQPAL
TSYVYYFMMAPEPVAFGMEKADQDLHKILKVLDKRLDDGRKYICNEFSIADIACFGFGSY
FNLNVFKGWNKYENVVRWVNTMSSRPSISKLLPIVEQTLRVRKLKRLDNQELVL*
Translated Amino Acid sequence (All Frames) 
Frame A:
---iqvygslyilvhlkfilclkn*iyliklv**ildlvnilkvslqkchqiikfqc*li
ihivstvvmmmnl*kslnlvqfyytwqrniksfyhhyqnqkrdvkfnngyhgksrkcnql
*plmyiil*whqnqlllvwkkltkiytkf*rf*inv*mmvenifvmnfqlli*lalvsvl
isi*mfskvginmkmlyvg*iqclqdllslnyyqllnkl*elen*kd*iikn*yf


Frame B:
---skfmdlytslfi*slfyv*rikytlsnlfsky*iw*tf*r*vcrnvtk**nsnvn**
yi*crqw****tfknl*iwcnfiilgreiskvfttiiktkremssstmaimanlgnatsf
nllcilfydgtrtscfwygks*prftqnfkgfr*tfr*w*kiyl**ifnc*ysllwfrfl
fqfkcfqrle*i*kcctlgkynvfktfyl*iitnc*tnfks*kikkir*sristl


Frame C:
---PSLWIFIHPCSFKVYFMFEELNIPYQTCLVNIRSGEHFKGEFAEMSPNNKIPMLIDN
TYSVDSGDDDEPLKIFESGAILLYLAEKYQKFLPPLSKPKERCQVQQWLSWQISEMQPAL
TSYVYYFMMAPEPVAFGMEKADQDLHKILKVLDKRLDDGRKYICNEFSIADIACFGFGSY
FNLNVFKGWNKYENVVRWVNTMSSRPSISKLLPIVEQTLRVRKLKRLDNQELVL*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL680 (SSL680Q) /CSM/SS/SSL6-D/SSL680Q.Seq.d/                       1386   0.0
SSM261 (SSM261Q) /CSM/SS/SSM2-C/SSM261Q.Seq.d/                       1346   0.0
VSJ886 (VSJ886Q) /CSM/VS/VSJ8-D/VSJ886Q.Seq.d/                         42   0.011
SSL657 (SSL657Q) /CSM/SS/SSL6-C/SSL657Q.Seq.d/                         42   0.011
CHA764 (CHA764Q) /CSM/CH/CHA7-C/CHA764Q.Seq.d/                         38   0.18
VFI157 (VFI157Q) /CSM/VF/VFI1-C/VFI157Q.Seq.d/                         36   0.70
FC-IC0206 (FC-IC0206Q) /CSM/FC-IC/FC-IC0206Q.Seq.d/                    36   0.70
CFI374 (CFI374Q) /CSM/CF/CFI3-D/CFI374Q.Seq.d/                         36   0.70
AFB187 (AFB187Q) /CSM/AF/AFB1-D/AFB187Q.Seq.d/                         36   0.70
VSI843 (VSI843Q) /CSM/VS/VSI8-B/VSI843Q.Seq.d/                         34   2.8
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    40  4e-04  10
AC116413|AC116413.3 Mus musculus clone RP24-84J11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    40  0.008  5
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    34  0.010  9
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    38  0.026  10
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  0.039  9
AC076964|AC076964.5 Homo sapiens chromosome 3 clone RP11-83N22, WORKING DRAFT SEQUENCE, 23 unordered pieces.    38  0.050  6
AL133516|AL133516.8 Human DNA sequence from clone RP4-553F17 on chromosome 1q42.11-42.3 Contains GSSs and a CpG island.    38  0.12  4
AC020720|AC020720.7 Homo sapiens BAC clone RP11-474O24 from 2, complete sequence.    42  0.23  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32  0.25  13
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    38  0.33  9
dna update 2003. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE008917_1315(AE008917|pid:none) Brucella melitensis 16M chromos...   145   2e-33
AE017223_597(AE017223|pid:none) Brucella abortus biovar 1 str. 9...   143   6e-33
AP009384_2927(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   141   2e-32
AE014291_601(AE014291|pid:none) Brucella suis 1330 chromosome I,...   140   3e-32
CP001196_3133(CP001196|pid:none) Oligotropha carboxidovorans OM5...   139   6e-32
CP000758_2635(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918...   137   2e-31
CU234118_2746(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   136   5e-31
CP000113_839(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   136   7e-31
CP001389_796(CP001389|pid:none) Rhizobium sp. NGR234, complete g...   133   5e-30
CP000086_1225(CP000086|pid:none) Burkholderia thailandensis E264...   132   8e-30
protein update 2009. 6.15
PSORT 

 psg: 0.89  gvh: 0.26  alm: 0.42  top: 0.43  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSL680 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSL680Z
3' end seq. 
>SSL680Z.Seq
----------TATCCAAGTTTATGGATCTTTATACATCCTTGTTCATTTAAAGTTTATTT
TATGTTTGAAGAATTAAATATACCTTATCAAACTTGTTTAGTAAATATTAGATCTGGTGA
ACATTTTAAAGGTGAGTTTGCAGAAATGTCACCAAATAATAAAATTCCAATGTTAATTGA
TAATACATATAGTGTCGACAGTGGTGATGATGATGAACCTTTAAAAATCTTTGAATCTGG
TGCAATTTTATTATACTTGGCAGAGAAATATCAAAAGTTTTTACCACCATTATCAAAACC
AAAAGAGAGATGTCAAGTTCAACAATGGCTATCATGGCAAATCTCGGAAATGCAACCAGC
TTTAACCTCTTATGTATATTATTTTATGATGGCACCAGAACCAGTTGCTTTTGGTATGGA
AAAAGCTGACCAAGATTTACACAAAATTTTAAAGGTTTTAGATAAACGTTTAGATGATGG
TAGAAAATATATTTGTAATGAATTTTCAATTGCTGATATAGCTTGCTTTGGTTTCGGTTC
TTATTTCAATTTAAATGTTTTCAAAGGTTGGAATAAATATGAAAATGTTGTACGTTGGGT
AAATACAATGTCTTCAAGACCTTCTATCTCTAAATTATTACCAATTGTTGAACAAACTTT
AAGAGTTAGAAAATTAAAAAGATTAGATAATCAAGAATTAGTACTTTAA
Length of 3' end seq. 699
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -