>SSM306 (SSM306Q) /CSM/SS/SSM3-A/SSM306Q.Seq.d/
XXXXXXXXXXAAAGTATGATAATGGTCAGTTTTTTGTTATCGCCAGTGGGCCAGTAATTA
ATGAAAAATTTAATGTTCCAAATCACCAGGTATCAAAATTTTTACTAACAAAAGATGAAT
ATGATTCTGTTTCAGTGCAGCTTCGTATCACATCTGATGGAGCACCAGAATCTTTAATCT
TTTCCAGTACTTTTAGTGATAAAACAAACATGACATATACTACCACTCCATTGGAATACT
CAATGTGTATCCCTCGTGACTTGTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTG
GTGATTACATTATCTCAATTCAAGGTACCTCTGATGTTTCAAAATGCTACGAGCATGTCC
CAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTAACATCTTCTGAACAACTTG
TTATACAATCTGATGGCACACTTAAAATGTATGTCACTGATTATGATGACGATAAAAATA
TAGAGTATCAAAAATCAACTGCTTCAACACCACTAGTCAATGGAGTTTTAATTTTTTCAA
CAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTT
TTTTTTTAAAAAAAAAATAAATAAAAAAAAATGTTTGAAAATATAAAAAAAAAA

---KYDNGQFFVIASGPVINEKFNVPNHQVSKFLLTKDEYDSVSVQLRITSDGAPESLIF
SSTFSDKTNMTYTTTPLEYSMCIPRDLSFSIKMNNYLLGGDYIISIQGTSDVSKCYEHVP
VNQANQEPESIVLTSSEQLVIQSDGTLKMYVTDYDDDKNIEYQKSTASTPLVNGVLIFST
VLLFLQLII*nvltktlfffflkkk*ikknv*kykkk

Frame A:
---KYDNGQFFVIASGPVINEKFNVPNHQVSKFLLTKDEYDSVSVQLRITSDGAPESLIF
SSTFSDKTNMTYTTTPLEYSMCIPRDLSFSIKMNNYLLGGDYIISIQGTSDVSKCYEHVP
VNQANQEPESIVLTSSEQLVIQSDGTLKMYVTDYDDDKNIEYQKSTASTPLVNGVLIFST
VLLFLQLII*nvltktlfffflkkk*ikknv*kykkk


Frame B:
---smimvsfllspvgq*lmknlmfqitryqnfy*qkmnmilfqcsfvshlmehqnl*sf
pvllvikqt*hilplhwntqcvslvtclfqsk*titswvvitlsqfkvplmfqnatsmsq
*tkltknlkvly*hllnnllynlmahlkcmslimmtiki*siknqllqhh*smef*ffqq
ffyfyn**sktf*qklsffff*kknk*kkmfenikkk


Frame C:
---v**wsvfcyrqwasn**ki*cskspgikiftnkr*i*fcfsaasyhi*wstrifnlf
qyf***nkhdiyyhsigilnvyps*lvffnqneqlplgw*lhylnsryl*cfkmlracps
kps*prt*kycinif*ttcyti*wht*nvch*l**r*kyrvskincfnttsqwsfnffns
sfiftinnlkrfnknslffffkkkinkkkclki*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM306 (SSM306Q) /CSM/SS/SSM3-A/SSM306Q.Seq.d/                       1156   0.0
SSK892 (SSK892Q) /CSM/SS/SSK8-D/SSK892Q.Seq.d/                       1156   0.0
SSG491 (SSG491Q) /CSM/SS/SSG4-D/SSG491Q.Seq.d/                       1148   0.0
SSF339 (SSF339Q) /CSM/SS/SSF3-B/SSF339Q.Seq.d/                       1148   0.0
CHO666 (CHO666Q) /CSM/CH/CHO6-C/CHO666Q.Seq.d/                       1148   0.0
CHH669 (CHH669Q) /CSM/CH/CHH6-C/CHH669Q.Seq.d/                       1142   0.0
SLC735 (SLC735Q) /CSM/SL/SLC7-B/SLC735Q.Seq.d/                       1116   0.0
SSD120 (SSD120Q) /CSM/SS/SSD1-A/SSD120Q.Seq.d/                       1094   0.0
SSI806 (SSI806Q) /CSM/SS/SSI8-A/SSI806Q.Seq.d/                       1076   0.0
AHF872 (AHF872Q) /CSM/AH/AHF8-C/AHF872Q.Seq.d/                       1047   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF016671|AF016671.3 Caenorhabditis elegans cosmid W09G10, complete sequence.    32  0.085  6
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    32  0.95  7
AC025727|AC025727.3 Caenorhabditis elegans cosmid Y73E7A, complete sequence.    36  1.2  4
AC113231|AC113231.2 Canis familiaris clone RP81-114C20, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38  1.3  2
AC073475|AC073475.4 Homo sapiens BAC clone RP11-679C8 from 4, complete sequence.    32  1.4  6
AP000981|AP000981.1 Sulfolobus tokodaii genomic DNA, complete sequence, section:1/10.    42  2.0  2
AL162496|AL162496.11 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-237E3.    44  2.1  1
BB445032|BB445032.1 Mus musculus 9 days embryo cDNA, RIKEN full-length enriched library, clone:D030048K07, 3' end partial sequence, similar to ddbj:AB037732 Homo sapiens mRNA for KIAA1311 protein.    44  2.1  1
AP004746|AP004746.1 Oryza sativa genomic DNA, chromosome 8, PAC clone:P0035F08, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  2.1  1
CC808593|CC808593.1 ZMMBBc0474G17f ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0474G17 5', genomic survey sequence.    44  2.1  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000512_995(CP000512|pid:none) Acidovorax citrulli AAC00-1, com...    34   4.3
AY093107_1(AY093107|pid:none) Arabidopsis thaliana unknown prote...    34   4.3
AM412317_259(AM412317|pid:none) Clostridium botulinum A str. ATC...    34   4.3
EU839994_92(EU839994|pid:none) Agrotis ipsilon multiple nucleopo...    34   4.3
AK049570_1(AK049570|pid:none) Mus musculus 7 days embryo whole b...    33   5.6
(Q8K135) RecName: Full=Uncharacterized protein KIAA0319-like;  &...    33   5.6
CP000728_773(CP000728|pid:none) Clostridium botulinum F str. Lan...    33   7.3
CP000507_144(CP000507|pid:none) Shewanella amazonensis SB2B, com...    33   9.5
AB014075_10(AB014075|pid:none) Clostridium histolyticum Orf9u, h...    33   9.5

 psg: 0.92  gvh: 0.36  alm: 0.26  top: 0.73  tms: 0.07  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSM306 is cyt

>SSM306Z.Seq
----------AAAGTATGATAATGGTCAGTTTTTTGTTATCGCCAGTGGGCCAGTAATTA
ATGAAAAATTTAATGTTCCAAATCACCAGGTATCAAAATTTTTACTAACAAAAGATGAAT
ATGATTCTGTTTCAGTGCAGCTTCGTATCACATCTGATGGAGCACCAGAATCTTTAATCT
TTTCCAGTACTTTTAGTGATAAAACAAACATGACATATACTACCACTCCATTGGAATACT
CAATGTGTATCCCTCGTGACTTGTCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTG
GTGATTACATTATCTCAATTCAAGGTACCTCTGATGTTTCAAAATGCTACGAGCATGTCC
CAGTAAACCAAGCTAACCAAGAACCTGAAAGTATTGTATTAACATCTTCTGAACAACTTG
TTATACAATCTGATGGCACACTTAAAATGTATGTCACTGATTATGATGACGATAAAAATA
TAGAGTATCAAAAATCAACTGCTTCAACACCACTAGTCAATGGAGTTTTAATTTTTTCAA
CAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTTTTAACAAAAACTCTCTTTTTTT
TTTTTTTAAAAAAAAAATAAATAAAAAAAAATGTTTGAAAATATAAAAAAAAAA