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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM644
Library SS
(Link to library)
Clone ID SSM644
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15044-1
Original site URL
Representative seq. ID SSM644P
(Link to Original site)
Representative DNA sequence 
>SSM644 (SSM644Q) /CSM/SS/SSM6-B/SSM644Q.Seq.d/
TAATAATGTCAGATATATTTTCTACTCATTTAAAAAATTATTTTCTATCTTTTTACGGTA
GTGGAGTAAAATTAATAGATTTACTTTTTAAAGATAGTTGTAATTTTAGATCTATTTCAC
TATTTGATATTTTAAACTGTTTTATTTTAATTTTAATTATTAAAATAGCAATTGTTAGTT
TAACCTTAACAAATGTGGTAACCTTTTTTATTTTATCAATATTTAATATTATATTATTTA
TATTACTTTTAATTCTTCTTTTATTTAAAATCAAATTCATCTTTTTAAGTTTAAAAAGTC
ACACAAGCAATACACCATCATTTACAGTTGGTCCATATCACCCATCAGTTTTTGCAACTA
TAAAAAATAAAAAATCTTTACATTCACAAAAACATAAAAGCAATATCTCTGAAAATGGGG
CATTTTATTTTTCATTTCTTGATGATGGTTATTATGAAACAGAATTTTTTATTGAAAATG
GTCATTCAAATAAAXXXXXXXXXXGATATTAAACAAGCCATTTAGGGAGCAATTTCAAAG
TTCAAAGATGCTGATGAGTTTTGGATTTTTTTTTATGGAGATACTAGTACTTTCCCAGAT
TTACAATCTTGGTCAAACTTTTTTTCAAATAATTCCAAATACTTAATTAACTTTTTTGGA
ATTGGTGGTTCATCAGACGAAAGAATGAAAAACATGGCCCAAATTAGTAGAGGTAAATTC
ATAAAAGTTTTTTAAGATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12. 3
Translated Amino Acid sequence 
IMSDIFSTHLKNYFLSFYGSGVKLIDLLFKDSCNFRSISLFDILNCFILILIIKIAIVSL
TLTNVVTFFILSIFNIILFILLLILLLFKIKFIFLSLKSHTSNTPSFTVGPYHPSVFATI
KNKKSLHSQKHKSNISENGAFYFSFLDDGYYETEFFIENGHSNK---

---ILNKPFREQFQSSKMLMSFGFFFMEILVLSQIYNLGQTFFQIIPNT*ltflelvvhq
tke*ktwpklvevns*kffkiskkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
**cqiyflli*kiifylftvve*n**iyflkivvildlfhylif*tvlf*f*llk*qllv
*p*qmw*pflfyqylilyylyyf*fffylksnssf*v*kvtqaihhhlqlvhithqflql
*kiknlyihknikaislkmghfifhflmmvimkqnfllkmviqi---

---dikqai*gaiskfkdadefwiffygdtstfpdlqswsnffsnnskylinffgiggss
dermknmaqisrgkfikvf*dfqkkkkkkkkkkkkkkkkkkkkkk

Frame B:
nnvryifysfkklfsiflr*wskinrftf*r*l*f*iyfti*yfklfyfnfny*nsnc*f
nlnkcgnlfyfini*yyiiyitfnssfi*nqihlfkfkkshkqytiiyswsispisfcny
kk*kiftftkt*kqyl*kwgilffis**wll*nrify*kwsfk*---

---ILNKPFREQFQSSKMLMSFGFFFMEILVLSQIYNLGQTFFQIIPNT*ltflelvvhq
tke*ktwpklvevns*kffkiskkkkkkkkkkkkkkkkkkkkkk

Frame C:
IMSDIFSTHLKNYFLSFYGSGVKLIDLLFKDSCNFRSISLFDILNCFILILIIKIAIVSL
TLTNVVTFFILSIFNIILFILLLILLLFKIKFIFLSLKSHTSNTPSFTVGPYHPSVFATI
KNKKSLHSQKHKSNISENGAFYFSFLDDGYYETEFFIENGHSNK---

---y*tshlgsnfkvqrc**vldfflwry*yfprftilvklffk*fqiln*lfwnwwfir
rknekhgpn**r*ihksflrfpkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM644 (SSM644Q) /CSM/SS/SSM6-B/SSM644Q.Seq.d/                        575   e-163
SSL634 (SSL634Q) /CSM/SS/SSL6-B/SSL634Q.Seq.d/                        337   2e-91
CFA111 (CFA111Q) /CSM/CF/CFA1-A/CFA111Q.Seq.d/                        238   1e-61
VSG858 (VSG858Q) /CSM/VS/VSG8-C/VSG858Q.Seq.d/                         36   0.80
VHP520 (VHP520Q) /CSM/VH/VHP5-A/VHP520Q.Seq.d/                         36   0.80
VHO595 (VHO595Q) /CSM/VH/VHO5-D/VHO595Q.Seq.d/                         36   0.80
VHM585 (VHM585Q) /CSM/VH/VHM5-D/VHM585Q.Seq.d/                         36   0.80
VHJ892 (VHJ892Q) /CSM/VH/VHJ8-D/VHJ892Q.Seq.d/                         36   0.80
VHJ404 (VHJ404Q) /CSM/VH/VHJ4-A/VHJ404Q.Seq.d/                         36   0.80
VHI878 (VHI878Q) /CSM/VH/VHI8-D/VHI878Q.Seq.d/                         36   0.80
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    38  0.028  8
BH563646|BH563646.1 BOGKP11TF BOGK Brassica oleracea genomic clone BOGKP11, DNA sequence.    50  0.043  1
CC188378|CC188378.1 CH261-129I19 CH261 Gallus gallus genomic clone CH261-129I19, DNA sequence.    48  0.17  1
AC102495|AC102495.3 Mus musculus clone RP24-566C13, WORKING DRAFT SEQUENCE, 12 unordered pieces.    48  0.17  1
AP004687|AP004687.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.56  2
CA758585|CA758585.1 OF14H11-T3.cro OF Oryza sativa cDNA clone OF14H11-T3.cro similar to No protein aligment, mRNA sequence.    46  0.68  1
BU774847|BU774847.1 SJEAVE05 SJE Schistosoma japonicum cDNA, mRNA sequence.    36  0.68  2
AC102691|AC102691.2 Mus musculus clone RP24-273A2, WORKING DRAFT SEQUENCE, 7 unordered pieces.    40  0.80  5
AL109749|AL109749.22 Human DNA sequence from clone RP6-213H19 on chromosome Xq25-26.3.    36  1.3  3
AC068893|AC068893.4 Homo sapiens chromosome 10 clone RP11-283C16, WORKING DRAFT SEQUENCE, 15 unordered pieces.    44  1.6  3
dna update 2003. 8.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 911,836,744
protein update 2009. 6.15
PSORT 

 psg: 0.89  gvh: 0.50  alm: 0.10  top: 0.60  tms: 0.20  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSM644 is end
5' end seq. ID SSM644F
5' end seq. 
>SSM644F.Seq
TAATAATGTCAGATATATTTTCTACTCATTTAAAAAATTATTTTCTATCTTTTTACGGTA
GTGGAGTAAAATTAATAGATTTACTTTTTAAAGATAGTTGTAATTTTAGATCTATTTCAC
TATTTGATATTTTAAACTGTTTTATTTTAATTTTAATTATTAAAATAGCAATTGTTAGTT
TAACCTTAACAAATGTGGTAACCTTTTTTATTTTATCAATATTTAATATTATATTATTTA
TATTACTTTTAATTCTTCTTTTATTTAAAATCAAATTCATCTTTTTAAGTTTAAAAAGTC
ACACAAGCAATACACCATCATTTACAGTTGGTCCATATCACCCATCAGTTTTTGCAACTA
TAAAAAATAAAAAATCTTTACATTCACAAAAACATAAAAGCAATATCTCTGAAAATGGGG
CATTTTATTTTTCATTTCTTGATGATGGTTATTATGAAACAGAATTTTTTATTGAAAATG
GTCATTCAAATAAA----------
Length of 5' end seq. 494
3' end seq. ID SSM644Z
3' end seq. 
>SSM644Z.Seq
----------GATATTAAACAAGCCATTTAGGGAGCAATTTCAAAGTTCAAAGATGCTGA
TGAGTTTTGGATTTTTTTTTATGGAGATACTAGTACTTTCCCAGATTTACAATCTTGGTC
AAACTTTTTTTCAAATAATTCCAAATACTTAATTAACTTTTTTGGAATTGGTGGTTCATC
AGACGAAAGAATGAAAAACATGGCCCAAATTAGTAGAGGTAAATTCATAAAAGTTTTTTA
AGATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
Length of 3' end seq. 306
Connected seq. ID SSM644P
Connected seq. 
>SSM644P.Seq
TAATAATGTCAGATATATTTTCTACTCATTTAAAAAATTATTTTCTATCTTTTTACGGTA
GTGGAGTAAAATTAATAGATTTACTTTTTAAAGATAGTTGTAATTTTAGATCTATTTCAC
TATTTGATATTTTAAACTGTTTTATTTTAATTTTAATTATTAAAATAGCAATTGTTAGTT
TAACCTTAACAAATGTGGTAACCTTTTTTATTTTATCAATATTTAATATTATATTATTTA
TATTACTTTTAATTCTTCTTTTATTTAAAATCAAATTCATCTTTTTAAGTTTAAAAAGTC
ACACAAGCAATACACCATCATTTACAGTTGGTCCATATCACCCATCAGTTTTTGCAACTA
TAAAAAATAAAAAATCTTTACATTCACAAAAACATAAAAGCAATATCTCTGAAAATGGGG
CATTTTATTTTTCATTTCTTGATGATGGTTATTATGAAACAGAATTTTTTATTGAAAATG
GTCATTCAAATAAA----------GATATTAAACAAGCCATTTAGGGAGCAATTTCAAAG
TTCAAAGATGCTGATGAGTTTTGGATTTTTTTTTATGGAGATACTAGTACTTTCCCAGAT
TTACAATCTTGGTCAAACTTTTTTTCAAATAATTCCAAATACTTAATTAACTTTTTTGGA
ATTGGTGGTTCATCAGACGAAAGAATGAAAAACATGGCCCAAATTAGTAGAGGTAAATTC
ATAAAAGTTTTTTAAGATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 800
Full length Seq ID -
Full length Seq. -
Length of full length seq. -