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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSM777
Library SS
(Link to library)
Clone ID SSM777
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13400-1
Original site URL
Representative seq. ID SSM777Z
(Link to Original site)
Representative DNA sequence 
>SSM777 (SSM777Q) /CSM/SS/SSM7-D/SSM777Q.Seq.d/
XXXXXXXXXXTTGTAATGATCCAAAATGGAGCCATCATAGAGGGAAAAGCCAAAAATAGA
GAAATCCAAGAAAACTTTATTAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCATTT
GAAGAAAGGGGAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGTCAT
GTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGAGAA
TTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATATAA
AATTAAATAAAAATATCATTTGAATTTATTTTTAAATGATTTAATAATTAAAT
sequence update 1998. 3.15
Translated Amino Acid sequence 
---VMIQNGAIIEGKAKNREIQENFIKNSVIHEIKIVSFEERGDTIVYQMVMNFEIGGHV
INKNQEVHQTWEYDKVIRELYV*kkvkkkkkvkinnfi*n*ikisfefifk*fnn*
Translated Amino Acid sequence (All Frames) 
Frame A:
---cndpkwshhrgksqk*rnprkly*klcys*n*ncfi*rkgrhyclsngnef*nwwsc
n*qkprgssnlgi**sy*riiclekskkekkskn**fyiklnknii*iyf*mi**ln


Frame B:
---VMIQNGAIIEGKAKNREIQENFIKNSVIHEIKIVSFEERGDTIVYQMVMNFEIGGHV
INKNQEVHQTWEYDKVIRELYV*kkvkkkkkvkinnfi*n*ikisfefifk*fnn*


Frame C:
---**skmeps*rekpkiekskktllktllfmklklfhlkkgetllfikw**ilklvvm*
ltktkrfiklgnmikllenymfrkk*krkkk*kliilykik*kyhlnlflndliik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM777 (SSM777Q) /CSM/SS/SSM7-D/SSM777Q.Seq.d/                        480   e-135
SSM329 (SSM329Q) /CSM/SS/SSM3-B/SSM329Q.Seq.d/                        480   e-135
SSK483 (SSK483Q) /CSM/SS/SSK4-D/SSK483Q.Seq.d/                        480   e-135
SSJ707 (SSJ707Q) /CSM/SS/SSJ7-A/SSJ707Q.Seq.d/                        480   e-135
SSJ575 (SSJ575Q) /CSM/SS/SSJ5-D/SSJ575Q.Seq.d/                        480   e-135
SSI104 (SSI104Q) /CSM/SS/SSI1-A/SSI104Q.Seq.d/                        480   e-135
SSH546 (SSH546Q) /CSM/SS/SSH5-B/SSH546Q.Seq.d/                        480   e-135
SSE451 (SSE451Q) /CSM/SS/SSE4-C/SSE451Q.Seq.d/                        480   e-135
SSD306 (SSD306Q) /CSM/SS/SSD3-A/SSD306Q.Seq.d/                        480   e-135
SSC451 (SSC451Q) /CSM/SS/SSC4-C/SSC451Q.Seq.d/                        480   e-135
own update 2003. 6.17
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U97194|U97194.3 Caenorhabditis elegans cosmid C37A2, complete sequence.    38  0.098  3
BZ347525|BZ347525.1 hm84h07.b1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone hm84h07 5', DNA sequence.    42  0.49  2
BZ343516|BZ343516.1 ho57b09.b2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ho57b09 5', DNA sequence.    42  0.50  2
BZ692374|BZ692374.1 SP__Ba0020C03.f SP__Ba Sorghum propinquum genomic clone SP__Ba0020C03 5', genomic survey sequence.    42  0.54  2
BZ366117|BZ366117.1 ic94g05.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum bicolor genomic clone ic94g05 5', DNA sequence.    42  0.55  2
AF047659|AF047659.1 Caenorhabditis elegans cosmid K07H8.    44  1.1  1
BG828151|BG828151.1 602753539F1 NIH_MGC_17 Homo sapiens cDNA clone IMAGE:4906184 5', mRNA sequence.    44  1.1  1
AL356282|AL356282.13 Human DNA sequence from clone RP11-303E19 on chromosome 9.    44  1.1  1
AC114187|AC114187.4 Rattus norvegicus clone CH230-229P12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44  1.1  1
AC020189|AC020189.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  1.4  2
dna update 2003. 8.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX908798_1158(BX908798|pid:none) Parachlamydia-related symbiont ...    33   4.0
FJ430564_3(FJ430564|pid:none) Bacillus cereus strain UW85 zwitte...    32   8.9
protein update 2009. 6.16
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSM777 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSM777Z
3' end seq. 
>SSM777Z.Seq
----------TTGTAATGATCCAAAATGGAGCCATCATAGAGGGAAAAGCCAAAAATAGA
GAAATCCAAGAAAACTTTATTAAAAACTCTGTTATTCATGAAATTAAAATTGTTTCATTT
GAAGAAAGGGGAGACACTATTGTTTATCAAATGGTAATGAATTTTGAAATTGGTGGTCAT
GTAATTAACAAAAACCAAGAGGTTCATCAAACTTGGGAATATGATAAAGTTATTAGAGAA
TTATATGTTTAGAAAAAAGTAAAAAAGAAAAAAAAAGTAAAAATTAATAATTTTATATAA
AATTAAATAAAAATATCATTTGAATTTATTTTTAAATGATTTAATAATTAAAT
Length of 3' end seq. 343
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -