>VFF894 (VFF894Q) /CSM/VF/VFF8-D/VFF894Q.Seq.d/
XXXXXXXXXXAATGGTTTCATAACAGGCTAAAAATTCTTTTTCGGATTGTTTTGGAATAA
CAACGAAAGCAGTTGTAAAGTAATCAGTTTGAGCGATATTATCAGCTGTAATTAAGTCAT
TTAAAGTACGAACTTGGAGATTACCACTTGCTTTTCTTTCTTCAGATGCAACAGAGGATG
AAAGTGTTGAATATTCACTTGATTTGATTTTTAAATCATCATCAATCTTTGAGACTGCAG
ATGAAATTTTTTCNACAATTTCTTGTAATGATAATTTTAAGNTATATTTGGCATCATCCC
AGGCAAATTNTTGAAGGNNTTGTGGAANGGTGTGACCANTGATTGAAAGACTCTNATCTT
NACCTGGGTTGGTCCCANCTNAATCGACNAATNGTCNGGCAATCTNTTNGANNTGTAGAT
NCAAACAAATGGTCNCGATNTTCTTGTAATTCATCATTGAGTGT

---mvs*qaknsfsdcfgittkavvk*sv*AILSAVIKSFKVRTWRLPLAFLSSDATEDE
SVEYSLDLIFKSSSIFETADEIFSTISCNDNFKXYLASSQANX*rxcgxv*pxierlxsx
pglvpxxstnxxaixxxcrxkqmvxxfl*fiiec

Frame A:
---mvs*qaknsfsdcfgittkavvk*sv*AILSAVIKSFKVRTWRLPLAFLSSDATEDE
SVEYSLDLIFKSSSIFETADEIFSTISCNDNFKXYLASSQANX*rxcgxv*pxierlxsx
pglvpxxstnxxaixxxcrxkqmvxxfl*fiiec


Frame B:
---wfhnrlkilfrivle*qrkql*snqferyyql*lshlkyelgdyhllfflqmqqrmk
vlnihli*flnhhqslrlqmkffxqflvmiilxyiwhhprqixegxvexcdx*lkdsxlx
lgwsxlnrxxvxqsxxxvdxnkwsrxscnssls


Frame C:
---gfitg*kfffglfwnnnessckvislsdiiscn*vi*stnleittcfsffrcnrg*k
c*ift*fdf*iiinl*dcr*nffxnfl***f*xifgiipgkxlkxlwxgvtxd*ktlixt
wvgpxxidxxsgnlxxx*xqtngxdxlvihh*v

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF894 (VFF894Q) /CSM/VF/VFF8-D/VFF894Q.Seq.d/                        775   0.0
SFB812 (SFB812Q) /CSM/SF/SFB8-A/SFB812Q.Seq.d/                        676   0.0
CFE361 (CFE361Q) /CSM/CF/CFE3-C/CFE361Q.Seq.d/                        676   0.0
SFE581 (SFE581Q) /CSM/SF/SFE5-D/SFE581Q.Seq.d/                        668   0.0
VFD323 (VFD323Q) /CSM/VF/VFD3-A/VFD323Q.Seq.d/                        656   0.0
CHB338 (CHB338Q) /CSM/CH/CHB3-B/CHB338Q.Seq.d/                        617   e-176
AFL423 (AFL423Q) /CSM/AF/AFL4-A/AFL423Q.Seq.d/                        613   e-174
VFB252 (VFB252Q) /CSM/VF/VFB2-C/VFB252Q.Seq.d/                        581   e-165
AFO447 (AFO447Q) /CSM/AF/AFO4-B/AFO447Q.Seq.d/                        577   e-164
VFL735 (VFL735Q) /CSM/VF/VFL7-B/VFL735Q.Seq.d/                        573   e-163

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L41839|L41839.1 Dictyostelium discoideum H(+)-transporting ATPase chain C mRNA, complete cds.   676  0.0  2
AL096154|AL096154.1 Arabidopsis thaliana genome survey sequence SP6 end of BAC T16H20 of TAMU library from strain Columbia of Arabidopsis thaliana.    44  1.5  1
AL210072|AL210072.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  159I15 of library G from Tetraodon nigroviridis.    44  1.5  1
AZ889558|AZ889558.1 RPCI-24-168D4.TV RPCI-24 Mus musculus genomic clone RPCI-24-168D4, DNA sequence.    44  1.5  1
AF058914|AF058914.1 Arabidopsis thaliana BAC F21E10.    44  1.5  1
BZ663474|BZ663474.1 SALK_027071.45.30.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_027071.45.30.x, DNA sequence.    44  1.5  1
AE010482|AE010482.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 24 of 197 of the complete genome.    42  2.2  3
AQ699138|AQ699138.1 HS_5560_B2_G12_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1136 Col=24 Row=N, genomic survey sequence.    40  2.5  2
AC114670|AC114670.5 Mus musculus clone RP24-176C17, WORKING DRAFT SEQUENCE, 6 unordered pieces.    40  3.7  4
AL954314|AL954314.7 Zebrafish DNA sequence from clone XX-162M2 in linkage group 25.    36  4.6  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54648) RecName: Full=V-type proton ATPase subunit C;          ...   223   1e-57
AC149131_21(AC149131|pid:none) Medicago truncatula chromosome 7 ...    94   1e-18
DQ838492_1(DQ838492|pid:none) Gossypium hirsutum vacuolar H+-ATP...    93   2e-18
(Q9SCB9) RecName: Full=V-type proton ATPase subunit C;          ...    92   7e-18
DQ631548_1(DQ631548|pid:none) Triticum aestivum vacuolar proton-...    91   2e-17
AY224442_1(AY224442|pid:none) Oryza sativa (japonica cultivar-gr...    87   2e-16
(Q9V7N5) RecName: Full=V-type proton ATPase subunit C;          ...    86   5e-16
BT015974_1(BT015974|pid:none) Drosophila melanogaster RE74713 fu...    86   5e-16
BT076831_1(BT076831|pid:none) Caligus rogercresseyi clone crog-e...    85   7e-16
DQ196178_1(DQ196178|pid:none) Triticum monococcum cultivar DV92 ...    84   1e-15

 psg: 0.61  gvh: 0.45  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: mitochondrial
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VFF894 is mit

>VFF894Z.Seq
----------AATGGTTTCATAACAGGCTAAAAATTCTTTTTCGGATTGTTTTGGAATAA
CAACGAAAGCAGTTGTAAAGTAATCAGTTTGAGCGATATTATCAGCTGTAATTAAGTCAT
TTAAAGTACGAACTTGGAGATTACCACTTGCTTTTCTTTCTTCAGATGCAACAGAGGATG
AAAGTGTTGAATATTCACTTGATTTGATTTTTAAATCATCATCAATCTTTGAGACTGCAG
ATGAAATTTTTTCNACAATTTCTTGTAATGATAATTTTAAGNTATATTTGGCATCATCCC
AGGCAAATTNTTGAAGGNNTTGTGGAANGGTGTGACCANTGATTGAAAGACTCTNATCTT
NACCTGGGTTGGTCCCANCTNAATCGACNAATNGTCNGGCAATCTNTTNGANNTGTAGAT
NCAAACAAATGGTCNCGATNTTCTTGTAATTCATCATTGAGTGT