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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG529
Library VF
(Link to library)
Clone ID VFG529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14177-1
Original site URL
Representative seq. ID VFG529P
(Link to Original site)
Representative DNA sequence 
>VFG529 (VFG529Q) /CSM/VF/VFG5-B/VFG529Q.Seq.d/
GGCCTACTGGAATTGCATATATGTGGTAATATCGTTAACAGATTTTAATATTACTAATAT
TGTAGAAAATGATTTTAAATAAAGTAGCAAAATGTTATGGTAAACAAATTGGATTTTTTG
GTAATAAAACCACTCAATTTATAAAACCAAATCAAACTATTTTTTTAATTGGTGGAACAA
AGAGATTATTTACAACTCAACAACAACAATCACCAAAAAAAGAAGAACCAAAATCTGAAC
AACAAAAAAAAAGTAGAGGATAAAACTGAAGAAAAAGAAAAAGAAAAAGATGAAGAAGAA
AATGAAAATGAAAAAGAAAAAGAAAATGAAGATGGAGAAGGTCAAAAAAAGAAATCTAAA
TTCAATGTACCACCAATTGTCACATCTGTAACCTCAACTTTCTTTGCAGGTGTACTTGTT
GCATCAACATTTGGTTATTTAACTTATAACTTTAAAAAGGATATTTCTGAAGAAGAAAGA
TATAGATTAAATTCAGTAGAATCTAAATTTTATCXXXXXXXXXXTGGTAAAAAATACACA
CTCGTAATTGATATCGATGCTCTTACTGAAATTACCAAAACTTCTAAATATCCAACCCTC
TACAAAAGAGCAGGTCTTGATTTCTTCTTAGATCATTTAAGAAAAGATTATGAAATCTAT
CTTTATTTTAATGGAAATATTCCACAAAATAAATATGAACAACTTCAATTTAAAATTGAT
ACAAATGGTAAATATTTCACTGGTTTACTTTATCCAGAAACTGGTATTAAAGAAAGAAAT
CAATTTAGTAAAAAGATTGAAATGTTAGATAGAGATCCATCAAAGGTTATCTTTATTGAT
GCCGCATCACCATATGATCATCCAAATGTTATCAATATTGGTAAATTCAAATCAAACTCT
AAAGATAAACTTTTAATTGAATTATTACCAGTACTTGAAAGTTTCTCCAGAAAGAATCTT
GATGATGTCAGACCTGAAATCTCTCAATTCCAAAATATTTCAAAACAATCATTAACTAAA
AATTTGGAAGATTATCTTTCAACTCATAATATTAATAGTCGTCAAAAAAAATAAATTAAA
TTAAATAAAATAAAAATAAAATAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
gllelhicgnivnrf*yy*ycrk*f*ik*qnvmvnkldflvikplnl*nqiklff*LVEQ
RDYLQLNNNNHQKKKNQNLNNKKKVEDKTEEKEKEKDEEENENEKEKENEDGEGQKKKSK
FNVPPIVTSVTSTFFAGVLVASTFGYLTYNFKKDISEEERYRLNSVESKFY---

---GKKYTLVIDIDALTEITKTSKYPTLYKRAGLDFFLDHLRKDYEIYLYFNGNIPQNKY
EQLQFKIDTNGKYFTGLLYPETGIKERNQFSKKIEMLDRDPSKVIFIDAASPYDHPNVIN
IGKFKSNSKDKLLIELLPVLESFSRKNLDDVRPEISQFQNISKQSLTKNLEDYLSTHNIN
SRQKK*iklnkikik*n
Translated Amino Acid sequence (All Frames) 
Frame A:
gllelhicgnivnrf*yy*ycrk*f*ik*qnvmvnkldflvikplnl*nqiklff*LVEQ
RDYLQLNNNNHQKKKNQNLNNKKKVEDKTEEKEKEKDEEENENEKEKENEDGEGQKKKSK
FNVPPIVTSVTSTFFAGVLVASTFGYLTYNFKKDISEEERYRLNSVESKFY---

---w*kihtrn*yrcsy*nyqnf*isnplqksrs*fllrsfkkrl*nlslf*wkystk*i
*ttsi*n*ykw*ifhwftlsrnwy*rkksi**kd*nvr*rsikgyly*criti*sskcyq
yw*iqikl*r*tfn*iitst*kflqkes**cqt*nlsipkyfktiin*kfgrlsfns*y*
*sskkin*ik*nknkik

Frame B:
aywnciyvvisltdfnitnivendfk*sskmlw*tnwifw**nhsiyktksnyffnwwnk
eiiynstttitkkrrtki*ttkkk*riklkkkkkkkmkkkmkmkkkkkmkmekvkkrnln
smyhqlshl*pqlslqvyllhqhlvi*litlkriflkkkdid*iq*nlnfi---

---GKKYTLVIDIDALTEITKTSKYPTLYKRAGLDFFLDHLRKDYEIYLYFNGNIPQNKY
EQLQFKIDTNGKYFTGLLYPETGIKERNQFSKKIEMLDRDPSKVIFIDAASPYDHPNVIN
IGKFKSNSKDKLLIELLPVLESFSRKNLDDVRPEISQFQNISKQSLTKNLEDYLSTHNIN
SRQKK*iklnkikik*n

Frame C:
ptgiaymw*yr*qilillil*kmilnkvakcygkqigffgnkttqfikpnqtifliggtk
rlfttqqqqspkkeepkseqqkksrg*n*rkrkrkr*rrk*k*krkrk*rwrrskkei*i
qcttnchicnlnflcrctcciniwlfnl*l*kgyf*rrki*ikfsri*il---

---vknths*lismlllklpkllniqpstkeqvliss*ii*ekimksifilmeifhkinm
nnfnlkliqmvnislvyfiqklvlkkeinlvkrlkc*ieihqrlsllmphhhmiiqmlsi
lvnsnqtlkinf*lnyyqylkvsperilmmsdlkslnskifqnnh*lkiwkiifqliili
vvkknkln*ik*k*nk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG529 (VFG529Q) /CSM/VF/VFG5-B/VFG529Q.Seq.d/                       1354   0.0
VSJ729 (VSJ729Q) /CSM/VS/VSJ7-B/VSJ729Q.Seq.d/                       1068   0.0
VFM724 (VFM724Q) /CSM/VF/VFM7-A/VFM724Q.Seq.d/                       1068   0.0
CFC848 (CFC848Q) /CSM/CF/CFC8-B/CFC848Q.Seq.d/                       1068   0.0
VSD259 (VSD259Q) /CSM/VS/VSD2-C/VSD259Q.Seq.d/                       1063   0.0
VFN518 (VFN518Q) /CSM/VF/VFN5-A/VFN518Q.Seq.d/                       1061   0.0
VFN640 (VFN640Q) /CSM/VF/VFN6-B/VFN640Q.Seq.d/                       1055   0.0
SFD605 (SFD605Q) /CSM/SF/SFD6-A/SFD605Q.Seq.d/                       1053   0.0
AFM555 (AFM555Q) /CSM/AF/AFM5-C/AFM555Q.Seq.d/                       1053   0.0
VFC824 (VFC824Q) /CSM/VF/VFC8-A/VFC824Q.Seq.d/                       1037   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42   7e-08  19
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    32   9e-08  26
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    50   2e-07  14
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    30   4e-05  19
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   7e-05  15
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   2e-04  16
AX344566|AX344566.1 Sequence 17 from Patent WO0200932.             34   4e-04  17
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    34   7e-04  16
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   8e-04  19
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    34   9e-04  11
dna update 2004. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007166_209(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    72   3e-11
AC002304_15(AC002304|pid:none) Genomic sequence for Arabidopsis ...    71   6e-11
(Q4WI16) RecName: Full=Mitochondrial import inner membrane trans...    70   1e-10
AM270139_49(AM270139|pid:none) Aspergillus niger contig An07c022...    70   1e-10
(O13636) RecName: Full=Mitochondrial import inner membrane trans...    69   2e-10
AM920433_382(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    67   9e-10
(Q4PEW9) RecName: Full=Mitochondrial import inner membrane trans...    65   3e-09
(Q5KNV7) RecName: Full=Mitochondrial import inner membrane trans...    65   3e-09
CR954203_454(CR954203|pid:none) Ostreococcus tauri strain OTTH05...    64   7e-09
CP000583_460(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    63   2e-08
protein update 2009. 6.20
PSORT 

 psg: 0.75  gvh: -0.04  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VFG529 is nuc
5' end seq. ID VFG529F
5' end seq. 
>VFG529F.Seq
GGCCTACTGGAATTGCATATATGTGGTAATATCGTTAACAGATTTTAATATTACTAATAT
TGTAGAAAATGATTTTAAATAAAGTAGCAAAATGTTATGGTAAACAAATTGGATTTTTTG
GTAATAAAACCACTCAATTTATAAAACCAAATCAAACTATTTTTTTAATTGGTGGAACAA
AGAGATTATTTACAACTCAACAACAACAATCACCAAAAAAAGAAGAACCAAAATCTGAAC
AACAAAAAAAAAGTAGAGGATAAAACTGAAGAAAAAGAAAAAGAAAAAGATGAAGAAGAA
AATGAAAATGAAAAAGAAAAAGAAAATGAAGATGGAGAAGGTCAAAAAAAGAAATCTAAA
TTCAATGTACCACCAATTGTCACATCTGTAACCTCAACTTTCTTTGCAGGTGTACTTGTT
GCATCAACATTTGGTTATTTAACTTATAACTTTAAAAAGGATATTTCTGAAGAAGAAAGA
TATAGATTAAATTCAGTAGAATCTAAATTTTATC----------
Length of 5' end seq. 514
3' end seq. ID VFG529Z
3' end seq. 
>VFG529Z.Seq
----------TGGTAAAAAATACACACTCGTAATTGATATCGATGCTCTTACTGAAATTA
CCAAAACTTCTAAATATCCAACCCTCTACAAAAGAGCAGGTCTTGATTTCTTCTTAGATC
ATTTAAGAAAAGATTATGAAATCTATCTTTATTTTAATGGAAATATTCCACAAAATAAAT
ATGAACAACTTCAATTTAAAATTGATACAAATGGTAAATATTTCACTGGTTTACTTTATC
CAGAAACTGGTATTAAAGAAAGAAATCAATTTAGTAAAAAGATTGAAATGTTAGATAGAG
ATCCATCAAAGGTTATCTTTATTGATGCCGCATCACCATATGATCATCCAAATGTTATCA
ATATTGGTAAATTCAAATCAAACTCTAAAGATAAACTTTTAATTGAATTATTACCAGTAC
TTGAAAGTTTCTCCAGAAAGAATCTTGATGATGTCAGACCTGAAATCTCTCAATTCCAAA
ATATTTCAAAACAATCATTAACTAAAAATTTGGAAGATTATCTTTCAACTCATAATATTA
ATAGTCGTCAAAAAAAATAAATTAAATTAAATAAAATAAAAATAAAATAAAAT
Length of 3' end seq. 583
Connected seq. ID VFG529P
Connected seq. 
>VFG529P.Seq
GGCCTACTGGAATTGCATATATGTGGTAATATCGTTAACAGATTTTAATATTACTAATAT
TGTAGAAAATGATTTTAAATAAAGTAGCAAAATGTTATGGTAAACAAATTGGATTTTTTG
GTAATAAAACCACTCAATTTATAAAACCAAATCAAACTATTTTTTTAATTGGTGGAACAA
AGAGATTATTTACAACTCAACAACAACAATCACCAAAAAAAGAAGAACCAAAATCTGAAC
AACAAAAAAAAAGTAGAGGATAAAACTGAAGAAAAAGAAAAAGAAAAAGATGAAGAAGAA
AATGAAAATGAAAAAGAAAAAGAAAATGAAGATGGAGAAGGTCAAAAAAAGAAATCTAAA
TTCAATGTACCACCAATTGTCACATCTGTAACCTCAACTTTCTTTGCAGGTGTACTTGTT
GCATCAACATTTGGTTATTTAACTTATAACTTTAAAAAGGATATTTCTGAAGAAGAAAGA
TATAGATTAAATTCAGTAGAATCTAAATTTTATC----------TGGTAAAAAATACACA
CTCGTAATTGATATCGATGCTCTTACTGAAATTACCAAAACTTCTAAATATCCAACCCTC
TACAAAAGAGCAGGTCTTGATTTCTTCTTAGATCATTTAAGAAAAGATTATGAAATCTAT
CTTTATTTTAATGGAAATATTCCACAAAATAAATATGAACAACTTCAATTTAAAATTGAT
ACAAATGGTAAATATTTCACTGGTTTACTTTATCCAGAAACTGGTATTAAAGAAAGAAAT
CAATTTAGTAAAAAGATTGAAATGTTAGATAGAGATCCATCAAAGGTTATCTTTATTGAT
GCCGCATCACCATATGATCATCCAAATGTTATCAATATTGGTAAATTCAAATCAAACTCT
AAAGATAAACTTTTAATTGAATTATTACCAGTACTTGAAAGTTTCTCCAGAAAGAATCTT
GATGATGTCAGACCTGAAATCTCTCAATTCCAAAATATTTCAAAACAATCATTAACTAAA
AATTTGGAAGATTATCTTTCAACTCATAATATTAATAGTCGTCAAAAAAAATAAATTAAA
TTAAATAAAATAAAAATAAAATAAAAT
Length of connected seq. 1097
Full length Seq ID -
Full length Seq. -
Length of full length seq. -