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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM748
Library AF
(Link to library)
Clone ID AFM748
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM748 (AFM748Q) /CSM/AF/AFM7-B/AFM748Q.Seq.d/
AAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATATAAA
TAAAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTT
CACTTGGNGAAAGTNCATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGAAAACA
TAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGTCAATACAAATGAAA
ATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAAATCATACCTTTTTT
CTGAAGAGGCCAGATCTCTCATTATTTTTGGTTCTATCCAACCAAACCCAAATTTCCCAA
CTGAAGCAAAAGATTTAAAAGTTGTAAGAGTTTATAAATCATTACCATTAGGTAACCCAG
CATCAGCAACTGATAAATATTATATTTTTGGNGATAATGGNGTCAGATGTGTCACTACCC
CATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGNGATA
TACTCATGCCATATTCAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
inkqskqtiykink*nfi*IKKKMIKLFCISAILFIFIFSLGESXLIRPNFYYRIDWENI
NCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSEEARSLIIFGSIQPNPNFPT
EAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVXDI
LMPY---
Translated Amino Acid sequence (All Frames) 
Frame A:
k*tnkanrqyik*inkilyk*kkk**nyfvyqqyclysffhlxkvh*ldqifiieligkt
*ivlelhvhniqhkksiqmkiqlqf*vsftqmaiinhtfflkrpdlslflvlsnqtqisq
lkqki*kl*efinhyh*vtqhqqliniiflximxsdvslphvhqqmqfy*isvlnkllxi
yschi---


Frame B:
nkqtkqtdni*nk*ikfyinkkkndkiilyisnivyihfftwxkxid*tkfll*n*lgkh
kly*ssmstifstksqyk*kfncnfkfhlprwl**iipff*rgqishyfwfyptkpkfpn
*skrfkscksl*iitir*psisn**ilyfwx*wxqmchypmcinrcsfieypy*tnc*xy
thaif---


Frame C:
inkqskqtiykink*nfi*IKKKMIKLFCISAILFIFIFSLGESXLIRPNFYYRIDWENI
NCIRAPCPQYSAQKVNTNENSTAILSFIYPDGYNKSYLFSEEARSLIIFGSIQPNPNFPT
EAKDLKVVRVYKSLPLGNPASATDKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVXDI
LMPY---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLA503 (SLA503Q) /CSM/SL/SLA5-A/SLA503Q.Seq.d/                        932   0.0
CFC881 (CFC881Q) /CSM/CF/CFC8-D/CFC881Q.Seq.d/                        932   0.0
AFM748 (AFM748Q) /CSM/AF/AFM7-B/AFM748Q.Seq.d/                        932   0.0
CFC889 (CFC889Q) /CSM/CF/CFC8-D/CFC889Q.Seq.d/                        924   0.0
AHO755 (AHO755Q) /CSM/AH/AHO7-C/AHO755Q.Seq.d/                        686   0.0
SSI514 (SSI514Q) /CSM/SS/SSI5-A/SSI514Q.Seq.d/                        605   e-172
SSL202 (SSL202Q) /CSM/SS/SSL2-A/SSL202Q.Seq.d/                        551   e-156
SSE431 (SSE431Q) /CSM/SS/SSE4-B/SSE431Q.Seq.d/                        543   e-153
SSI294 (SSI294Q) /CSM/SS/SSI2-D/SSI294Q.Seq.d/                        500   e-140
SSE726 (SSE726Q) /CSM/SS/SSE7-B/SSE726Q.Seq.d/                        500   e-140
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060164) Dictyostelium discoideum slug cDNA, clone SLA503.      914   0.0    1
(BJ360565) Dictyostelium discoideum cDNA clone:ddc6b22, 5' e...   914   0.0    1
(BJ329841) Dictyostelium discoideum cDNA clone:dda26p11, 5' ...   914   0.0    1
(BJ360567) Dictyostelium discoideum cDNA clone:ddc6b24, 5' e...   906   0.0    1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   733   0.0    2
(BJ338254) Dictyostelium discoideum cDNA clone:dda60n13, 5' ...   668   0.0    1
(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.        591   e-168  2
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.        500   e-137  1
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.        500   e-137  1
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.        482   e-132  1
dna update 2009. 4.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   294   1e-78
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   172   4e-42
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   122   6e-27
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    44   0.002
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    41   0.018
CU694393_2(CU694393|pid:none) Ralstonia solanacearum strain MolK...    34   2.9
CU914166_626(CU914166|pid:none) Ralstonia solanacearum strain IP...    34   2.9
CP000552_1006(CP000552|pid:none) Prochlorococcus marinus str. MI...    33   5.0
AB353108_1(AB353108|pid:none) Gasterosteus aculeatus GaHCE1 mRNA...    33   6.5
CP001146_1017(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    33   6.5
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM748 is

5' end seq. ID AFM748F
5' end seq. 
>AFM748F.Seq
AAATAAACAAACAAAGCAAACAGACAATATATAAAATAAATAAATAAAATTTTATATAAA
TAAAAAAAAAAATGATAAAATTATTTTGTATATCAGCAATATTGTTTATATTCATTTTTT
CACTTGGNGAAAGTNCATTGATTAGACCAAATTTTTATTATAGAATTGATTGGGAAAACA
TAAATTGTATTAGAGCTCCATGTCCACAATATTCAGCACAAAAAGTCAATACAAATGAAA
ATTCAACTGCAATTTTAAGTTTCATTTACCCAGATGGCTATAATAAATCATACCTTTTTT
CTGAAGAGGCCAGATCTCTCATTATTTTTGGTTCTATCCAACCAAACCCAAATTTCCCAA
CTGAAGCAAAAGATTTAAAAGTTGTAAGAGTTTATAAATCATTACCATTAGGTAACCCAG
CATCAGCAACTGATAAATATTATATTTTTGGNGATAATGGNGTCAGATGTGTCACTACCC
CATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGNGATA
TACTCATGCCATATTCAXXXXXXXXXX
Length of 5' end seq. 567
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -