>VFJ663 (VFJ663Q) /CSM/VF/VFJ6-C/VFJ663Q.Seq.d/
XXXXXXXXXXATGGGCTNNAGNACNTTTGNAAAAGAATCCTCCAGATTTAATTGAAAGAA
TTCAAGTTGNTAATNAAGNCTATAATGTTGGTTTATGGNAATTTATGGTTTATTTAGATC
AGGTTTTACCGCTTTGGTTAAATA

---WAXXXLXKNPPDLIERIQVXNXXYNVGLWXFMVYLDQVLPLWLN

Frame A:
---WAXXXLXKNPPDLIERIQVXNXXYNVGLWXFMVYLDQVLPLWLN


Frame B:
---glxxxxkrilqi*lkefklxxkximlvygnlwfi*irfyrfg*i


Frame C:
---gxxtfxkessrfn*knssx*xxl*cwfmxiyglfrsgftalvk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFJ663 (VFJ663Q) /CSM/VF/VFJ6-C/VFJ663Q.Seq.d/                        212   1e-54
VSB278 (VSB278Q) /CSM/VS/VSB2-D/VSB278Q.Seq.d/                        105   2e-22
VFD144 (VFD144Q) /CSM/VF/VFD1-B/VFD144Q.Seq.d/                        105   2e-22
SSC166 (SSC166Q) /CSM/SS/SSC1-C/SSC166Q.Seq.d/                        105   2e-22
SLK530 (SLK530Q) /CSM/SL/SLK5-B/SLK530Q.Seq.d/                         92   3e-18
VSD301 (VSD301Q) /CSM/VS/VSD3-A/VSD301Q.Seq.d/                         90   1e-17
VFG810 (VFG810Q) /CSM/VF/VFG8-A/VFG810Q.Seq.d/                         90   1e-17
SFB389 (SFB389Q) /CSM/SF/SFB3-D/SFB389Q.Seq.d/                         90   1e-17
VSH680 (VSH680Q) /CSM/VS/VSH6-D/VSH680Q.Seq.d/                         78   4e-14
VFN549 (VFN549Q) /CSM/VF/VFN5-C/VFN549Q.Seq.d/                         72   2e-12

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   105   9e-30  4
BX005338|BX005338.9 Zebrafish DNA sequence from clone DKEY-14I9 in linkage group 12.    42   1.9    1
AC126517|AC126517.4 Rattus norvegicus clone CH230-55H4, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   1.9    1
AC131445|AC131445.6 Rattus norvegicus clone CH230-3L19, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   1.9    1
CL092224|CL092224.1 ISB1-21L5_T7.1 ISB1 Silurana tropicalis genomic clone ISB1-21L5, genomic survey sequence.    32   3.8    2
AC068146|AC068146.3 Homo sapiens chromosome 15 clone RP11-683C8 map 15, WORKING DRAFT SEQUENCE, 43 unordered pieces.    36   4.3    5
AP004645|AP004645.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10.    36   6.2    2
CG833079|CG833079.1 ZMMBBc0128G05r ZMMBBc (EcoRI) Zea mays subsp. mays genomic clone ZMMBBc0128G05 3', genomic survey sequence.    40   7.4    1
AL356121|AL356121.13 Human DNA sequence from clone RP11-72I2 on chromosome 6.    40   7.4    1
AL139078|AL139078.2 Campylobacter jejuni NCTC11168 complete genome; segment 5/6.    40   7.4    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR628337_2859(CR628337|pid:none) Legionella pneumophila str. Len...    34   1.4
AE017354_2855(AE017354|pid:none) Legionella pneumophila subsp. p...    34   1.4
CP000479_1625(CP000479|pid:none) Mycobacterium avium 104, comple...    32   5.4

 psg: 0.45  gvh: 0.53  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFJ663 is nuc

>VFJ663Z.Seq
NNNNNNNNNNATGGGCTNNAGNACNTTTGNAAAAGAATCCTCCAGATTTAATTGAAAGAA
TTCAAGTTGNTAATNAAGNCTATAATGTTGGTTTATGGNAATTTATGGTTTATTTAGATC
AGGTTTTACCGCTTTGGTTAAATA