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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFO147
Library VF
(Link to library)
Clone ID VFO147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16449-1
Original site URL
Representative seq. ID VFO147P
(Link to Original site)
Representative DNA sequence 
>VFO147 (VFO147Q) /CSM/VF/VFO1-B/VFO147Q.Seq.d/
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTAXXXXXX
XXXXGAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACT
AAAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAACAATTGATAAAGCTAAACAA
GTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACATGTAAGA
TATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGACATCA
AAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGAATAAA
TGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTCCAGTT
TCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAGCATAT
GAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACAGCACA
TTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTTTACAA
AAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTC
ATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTGAATGT
AAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGATGGNATATAT
TTTCTTCAAATTCAACGTATCAAAAATAAGAAAAAATAATAATAATTAAATAATAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
ifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLLCKMSI
PAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGASTGAGLG
NAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDL---

---DLDIISKELIAKDIEFTTKALKTLQTSLKNKTIDKAKQVELGTYNKVLELLESGKHV
RYGTYSNAETEHVRDLHLLTSKPAIYLINLSEEDFIRKKNKWLAKIKAWVDENGGGTMIP
VSVSFEKALLDLSSDDERKAYEKEKGAVSIMPKIIKTGYSTLNLINFFTCGKDEVRSWCL
QKGNKAPQAAGVIHTDFEKGFIMAETMAYSDFFELKSEAECKSRGKYRMEGKNYEVVDGI
YFLQIQRIKNKKK***lnnkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLLCKMSI
PAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGASTGAGLG
NAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDL---

---ei*isfqkn*lpkilnsqlkl*klykpl*kikqliklnklnlvliikf*ny*nqvnm
*dmvliqmlklnmfviyiy*hqnqqfi*siflkkislerring*qrlkhglmkmvvvq*f
qfq*vlkklywiylqmmkekhmkkkkvqlvlcqkslklvtah*issislhvvkmklevgv
ykkvtklhkllvsftliskkvslwlklwliltfsn*nlklnvnqeeniewkvktmkllmx
yiffkfnvskirknnnn*iik

Frame B:
yfqfvlrlrfynikcqklqlnl*ivvqpsaelvttskwvllvcqmlvkvhcsiyyvkcqf
qlkishfvlliqiyhvalfqmnvilgyvnignqrvkshliykslillv*lkvlqlvlvlv
mlsfltfnksmvfti*fvplkmmksfmlkiqstqsei---

---rfryhfkrincqry*ihn*sfknftnlfkk*nn**s*ts*twyl**sfriirir*tc
kiwylfkc*n*tcs*ftfidiktsnlfnqsf*rrfh*kee*mvskd*smg**kwwwynds
sfskf*ksfigfifr**kksi*krkrcs*yyaknh*nwlqhikshqflymw*r*s*klvf
tkr*qsstscwchsh*frkrfhyg*nyglf*lfriki*s*m*ikrki*ngr*kl*sc*wx
ifssnstyqk*ekiiiik**k

Frame C:
ifsly*d*gfii*nvknss*tcrl*fnpqqsw*pppngccwyakcw*kfivqfim*nvns
s*kfpilyy*skfitlrcsr*tlylvm*tletke*spilftnh*ycwfs*rcfnwcwsw*
cfpfshstsrwylpydscl*k**nhsc*rfsrpsqrf---

---DLDIISKELIAKDIEFTTKALKTLQTSLKNKTIDKAKQVELGTYNKVLELLESGKHV
RYGTYSNAETEHVRDLHLLTSKPAIYLINLSEEDFIRKKNKWLAKIKAWVDENGGGTMIP
VSVSFEKALLDLSSDDERKAYEKEKGAVSIMPKIIKTGYSTLNLINFFTCGKDEVRSWCL
QKGNKAPQAAGVIHTDFEKGFIMAETMAYSDFFELKSEAECKSRGKYRMEGKNYEVVDGI
YFLQIQRIKNKKK***lnnkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO147 (VFO147Q) /CSM/VF/VFO1-B/VFO147Q.Seq.d/                       2355   0.0
AFK414 (AFK414Q) /CSM/AF/AFK4-A/AFK414Q.Seq.d/                       1433   0.0
VFI192 (VFI192Q) /CSM/VF/VFI1-D/VFI192Q.Seq.d/                       1427   0.0
VFF322 (VFF322Q) /CSM/VF/VFF3-A/VFF322Q.Seq.d/                       1427   0.0
VFC844 (VFC844Q) /CSM/VF/VFC8-B/VFC844Q.Seq.d/                       1427   0.0
CFH382 (CFH382Q) /CSM/CF/CFH3-D/CFH382Q.Seq.d/                       1427   0.0
CFF767 (CFF767Q) /CSM/CF/CFF7-C/CFF767Q.Seq.d/                       1427   0.0
VFO224 (VFO224Q) /CSM/VF/VFO2-A/VFO224Q.Seq.d/                       1421   0.0
VFE271 (VFE271Q) /CSM/VF/VFE2-C/VFE271Q.Seq.d/                       1411   0.0
AFL465 (AFL465Q) /CSM/AF/AFL4-C/AFL465Q.Seq.d/                       1411   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436004) Dictyostelium discoideum cDNA clone:ddv29m11, 3' ...  1229   0.0    1
(BJ399530) Dictyostelium discoideum cDNA clone:dds6k08, 3' e...  1229   0.0    1
(BJ377090) Dictyostelium discoideum cDNA clone:ddc22g13, 3' ...  1223   0.0    1
(BJ433201) Dictyostelium discoideum cDNA clone:ddv21g04, 3' ...  1179   0.0    2
(BJ432153) Dictyostelium discoideum cDNA clone:ddv17g23, 3' ...  1179   0.0    2
(BJ431043) Dictyostelium discoideum cDNA clone:ddv9m18, 3' e...  1179   0.0    2
(BJ430179) Dictyostelium discoideum cDNA clone:ddv6h12, 3' e...  1179   0.0    2
(BJ428219) Dictyostelium discoideum cDNA clone:ddv11l05, 3' ...  1179   0.0    2
(BJ373113) Dictyostelium discoideum cDNA clone:ddc15d21, 3' ...  1179   0.0    2
(BJ372423) Dictyostelium discoideum cDNA clone:ddc12f17, 3' ...  1179   0.0    2
dna update 2009. 5.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008214_456(AP008214|pid:none) Oryza sativa (japonica cultivar-...   409   e-113
BT040728_1(BT040728|pid:none) Zea mays full-length cDNA clone ZM...   408   e-112
BT052517_1(BT052517|pid:none) Medicago truncatula clone MTYFD_FE...   405   e-111
CP001326_559(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   401   e-110
(P91917) RecName: Full=Putative GTP-binding protein tag-210;  &T...   394   e-108
CP000589_33(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...   393   e-108
FN357318_24(FN357318|pid:none) Schistosoma mansoni genome sequen...   392   e-107
AL844506_219(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...   391   e-107
EF085812_1(EF085812|pid:none) Picea sitchensis clone WS0288_L10 ...   390   e-107
CP000596_68(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 ...   388   e-106
protein update 2009. 6.25
PSORT 

 psg: 0.79  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFO147 is nuc
5' end seq. ID VFO147F
5' end seq. 
>VFO147F.Seq
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTANNNNNN
NNNN
Length of 5' end seq. 484
3' end seq. ID VFO147Z
3' end seq. 
>VFO147Z.Seq
NNNNNNNNNNGAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTC
ACAACTAAAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAACAATTGATAAAGCT
AAACAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACAT
GTAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTG
ACATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAG
AATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATT
CCAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAA
GCATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTAC
AGCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGT
TTACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAA
GGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCT
GAATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGATGGN
ATATATTTTCTTCAAATTCAACGTATCAAAAATAAGAAAAAATAATAATAATTAAATAAT
AAAAAA
Length of 3' end seq. 786
Connected seq. ID VFO147P
Connected seq. 
>VFO147P.Seq
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTA------
----GAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACT
AAAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAACAATTGATAAAGCTAAACAA
GTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACATGTAAGA
TATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGACATCA
AAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGAATAAA
TGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTCCAGTT
TCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAGCATAT
GAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACAGCACA
TTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTTTACAA
AAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTC
ATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTGAATGT
AAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGATGGNATATAT
TTTCTTCAAATTCAACGTATCAAAAATAAGAAAAAATAATAATAATTAAATAATAAAAAA
Length of connected seq. 1250
Full length Seq ID -
Full length Seq. -
Length of full length seq. -