>AFN670 (AFN670Q) /CSM/AF/AFN6-C/AFN670Q.Seq.d/
XXXXXXXXXXTGGCACCCTATAAACCATTATTAAAGTTTACATCCAATTAAAATCGTCGT
ATTCTTTTGTTTTTGGCAATCGATTGCTATCTCTGGTATGACAAATTTTGGTTGGATTCC
AACTCTTGATGGTTGGAATTCTGGTGAAGTTTCAACTGGTTTACAAAACTTTTTAATTTG
TTTTGAAATGTTTGGAGTTGCAATATTACATCAATATGCCTTCCCATATGAATTATATAG
GGTAAGAGCATTTAGTGCAGCACCATTAATTCATAGAGTTGAAATGGGTACAGTATTTAA
GAGTGTAATAAATTCAGTAAGTCAAAAGGATATGGTAAAGGAAACTGTTAAATCATTTAA
AGGAACAAAGATTACAGATGGTAAAACAGGTTTATATAGTGGTTTAAAAGATGAAGTTTT
CAATGAATTTGATATTGAAGAAATTGAAATGGGTGATTTTACTTCTGCAAATGATAATAA
TAATTTTGATGATTTCGATTTTTCTGAAAATAATATAAATAGTAATANCAAGNATAATAA
TAGTAGTATTTATAATGANGGTGCTTCAAAAAAGACACCATNTTGGTTNTGCAATTTTAG
CAAGGTGGTGGTGGAGG

---hpinhy*SLHPIKIVVFFCFWQSIAISGMTNFGWIPTLDGWNSGEVSTGLQNFLICF
EMFGVAILHQYAFPYELYRVRAFSAAPLIHRVEMGTVFKSVINSVSQKDMVKETVKSFKG
TKITDGKTGLYSGLKDEVFNEFDIEEIEMGDFTSANDNNNFDDFDFSENNINSNXKXNNS
SIYNXGASKKTPXWXCNFSKVVVE

Frame A:
---gtl*tiikvyiqlkssysfvfgnrllslv*qilvgfqllmvgilvkfqlvyktf*fv
lkclelqyyinmpshmnyig*ehlvqhh*fielkwvqylrv**iq*vkriw*rkllnhlk
eqrlqmvkqvyivv*kmkfsmnlilkklkwvilllqmiiiilmisiflkii*ivixxiii
vvfimxvlqkrhhxgxailarwwwr


Frame B:
---apykpllkftsn*nrrillflaidcylwydkfwldsns*wlefw*sfnwftklfnlf
*nvwscnitsiclpi*ii*gksi*cstins*s*ngysi*ecnkfskskgygkgnc*ii*r
nkdyrw*nrfi*wfkr*sfq*i*y*rn*ng*fyfck****f**frff*k*yk**xqx***
*yl**xcfkkdtxlvxqf*qgggg


Frame C:
---hpinhy*SLHPIKIVVFFCFWQSIAISGMTNFGWIPTLDGWNSGEVSTGLQNFLICF
EMFGVAILHQYAFPYELYRVRAFSAAPLIHRVEMGTVFKSVINSVSQKDMVKETVKSFKG
TKITDGKTGLYSGLKDEVFNEFDIEEIEMGDFTSANDNNNFDDFDFSENNINSNXKXNNS
SIYNXGASKKTPXWXCNFSKVVVE

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFN670 (AFN670Q) /CSM/AF/AFN6-C/AFN670Q.Seq.d/                       1174   0.0
AFN645 (AFN645Q) /CSM/AF/AFN6-B/AFN645Q.Seq.d/                       1136   0.0
CHC785 (CHC785Q) /CSM/CH/CHC7-D/CHC785Q.Seq.d/                        872   0.0
AFE728 (AFE728Q) /CSM/AF/AFE7-B/AFE728Q.Seq.d/                        797   0.0
AFN821 (AFN821Q) /CSM/AF/AFN8-A/AFN821Q.Seq.d/                        716   0.0
CHD230 (CHD230Q) /CSM/CH/CHD2-B/CHD230Q.Seq.d/                        690   0.0
VFK292 (VFK292Q) /CSM/VF/VFK2-D/VFK292Q.Seq.d/                         46   6e-04
CHQ659 (CHQ659Q) /CSM/CH/CHQ6-C/CHQ659Q.Seq.d/                         46   6e-04
SLF665 (SLF665Q) /CSM/SL/SLF6-C/SLF665Q.Seq.d/                         40   0.039
CHJ685 (CHJ685Q) /CSM/CH/CHJ6-D/CHJ685Q.Seq.d/                         40   0.039

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U68754|U68754.1 Dictyostelium discoideum putative transcription factor (stkA) mRNA, complete cds.    46  7e-04  2
BX511147|BX511147.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38  0.003  7
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    38  0.004  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.005  5
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  0.017  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    46  0.017  3
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36  0.020  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  0.025  12
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    40  0.025  5
AE001418|AE001418.1 Plasmodium falciparum chromosome 2, section 55 of 73 of the complete sequence.    42  0.034  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000582_10(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ...    65   1e-09
BC004056_1(BC004056|pid:none) Mus musculus transmembrane protein...    64   2e-09
(Q3TPR7) RecName: Full=Transmembrane protein 184C; AltName: Full...    64   2e-09
AK033404_1(AK033404|pid:none) Mus musculus 16 days embryo lung c...    64   2e-09
CR942511_1(CR942511|pid:none) Xenopus tropicalis finished cDNA, ...    63   6e-09
BC068743_1(BC068743|pid:none) Xenopus laevis hypothetical protei...    63   7e-09
BC026659_1(BC026659|pid:none) Mus musculus transmembrane protein...    60   5e-08
(Q5RET6) RecName: Full=Transmembrane protein 184C; AltName: Full...    60   6e-08
(Q6GQE1) RecName: Full=Transmembrane protein 184C; AltName: Full...    60   6e-08
(Q17QL9) RecName: Full=Transmembrane protein 184C; AltName: Full...    60   6e-08

 psg: 1.00  gvh: 0.54  alm: 0.33  top: 0.23  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFN670 is exc

>AFN670Z.Seq
----------TGGCACCCTATAAACCATTATTAAAGTTTACATCCAATTAAAATCGTCGT
ATTCTTTTGTTTTTGGCAATCGATTGCTATCTCTGGTATGACAAATTTTGGTTGGATTCC
AACTCTTGATGGTTGGAATTCTGGTGAAGTTTCAACTGGTTTACAAAACTTTTTAATTTG
TTTTGAAATGTTTGGAGTTGCAATATTACATCAATATGCCTTCCCATATGAATTATATAG
GGTAAGAGCATTTAGTGCAGCACCATTAATTCATAGAGTTGAAATGGGTACAGTATTTAA
GAGTGTAATAAATTCAGTAAGTCAAAAGGATATGGTAAAGGAAACTGTTAAATCATTTAA
AGGAACAAAGATTACAGATGGTAAAACAGGTTTATATAGTGGTTTAAAAGATGAAGTTTT
CAATGAATTTGATATTGAAGAAATTGAAATGGGTGATTTTACTTCTGCAAATGATAATAA
TAATTTTGATGATTTCGATTTTTCTGAAAATAATATAAATAGTAATANCAAGNATAATAA
TAGTAGTATTTATAATGANGGTGCTTCAAAAAAGACACCATNTTGGTTNTGCAATTTTAG
CAAGGTGGTGGTGGAGG