>VHE156 (VHE156Q) /CSM/VH/VHE1-C/VHE156Q.Seq.d/
XXXXXXXXXXCAANTGNGACTCCNAANTGAGACTCCCAANTGAGANTCCANCAGAGANTC
CAACAGAANCTCCANCAGAGACTCCAACAGAAACTCCAACAGAGACTCCAACAGAAACTC
CAACAGAAACTCCAACAGAAACTCCAACAGAAACTCCAACAGAAACTCCAACAGAAACTC
CAACCGAGACTCCAACTGAAACTGTTACTCCAACCCCAACAGTAACACCAACTGAAACTC
CATCAAGTGGAGAATCTTTATCAATCTATAAAAGTGGATTAAAAAATGATTTCCAAGATT
GGTCATGGGGTGAGCATTCATTAACTGATACAACAAATGTTGAATCTGGAGAAACCAATT
CAATTTCATTTACACCAAAAGCATATGGTGCAGTATTTTTAGGATGTTTCGAATGTATTG
ATACTGATACATACAATAATATTGAATTTGATATTAATGGTGGTAGCAGTGGTGCTCAAT
TATTAAGAATAACTGTTGTTAAAAATAGTAAATCTGTTGGTTCCAAATTAATTACCGATC
TTAATGGTGGAACTCCAATCGAAGNAAAAAAAANAAATAATAATAATGNTTCNAATAA

---XXDSXXRLPXEXPXEXPTEXPXETPTETPTETPTETPTETPTETPTETPTETPTETP
TETPTETVTPTPTVTPTETPSSGESLSIYKSGLKNDFQDWSWGEHSLTDTTNVESGETNS
ISFTPKAYGAVFLGCFECIDTDTYNNIEFDINGGSSGAQLLRITVVKNSKSVGSKLITDL
NGGTPIEXKKXNNNNXSN

Frame A:
---XXDSXXRLPXEXPXEXPTEXPXETPTETPTETPTETPTETPTETPTETPTETPTETP
TETPTETVTPTPTVTPTETPSSGESLSIYKSGLKNDFQDWSWGEHSLTDTTNVESGETNS
ISFTPKAYGAVFLGCFECIDTDTYNNIEFDINGGSSGAQLLRITVVKNSKSVGSKLITDL
NGGTPIEXKKXNNNNXSN


Frame B:
---xxtpx*dsqxrxxqrxqqxlxqrlqqklqqrlqqklqqklqqklqqklqqklqqklq
prlqlklllqpqq*hqlklhqvenlyqsikvd*kmiskighgvsih*liqqmlnlekpiq
fhlhqkhmvqyf*dvsnvlilihtiilnlilmvvavvlny*e*lllkivnllvpn*lpil
mvelqskxkkxiiimxxi


Frame C:
---xxlxxetpx*xsxrxsnrxsxrdsnrnsnrdsnrnsnrnsnrnsnrnsnrnsnrnsn
rdsn*ncysnpnsntn*nsikwrifinl*kwikk*fprlvmg*afin*ynkc*iwrnqfn
fiytksiwcsifrmfrmy*y*yiq*y*i*y*ww*qwcsiiknncc*k**icwfqinyrs*
wwnsnrxkkxk***xfx*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHE156 (VHE156Q) /CSM/VH/VHE1-C/VHE156Q.Seq.d/                        753   0.0
CHN292 (CHN292Q) /CSM/CH/CHN2-D/CHN292Q.Seq.d/                        753   0.0
CHP869 (CHP869Q) /CSM/CH/CHP8-C/CHP869Q.Seq.d/                        739   0.0
CHL715 (CHL715Q) /CSM/CH/CHL7-A/CHL715Q.Seq.d/                        660   0.0
SFB540 (SFB540Q) /CSM/SF/SFB5-B/SFB540Q.Seq.d/                         60   4e-08
VSJ853 (VSJ853Q) /CSM/VS/VSJ8-C/VSJ853Q.Seq.d/                         44   0.002
VFJ620 (VFJ620Q) /CSM/VF/VFJ6-A/VFJ620Q.Seq.d/                         44   0.002
VFH383 (VFH383Q) /CSM/VF/VFH3-D/VFH383Q.Seq.d/                         44   0.002
FC-AK17 (FC-AK17Q) /CSM/FC/FC-AK/FC-AK17Q.Seq.d/                       44   0.002
CHS411 (CHS411Q) /CSM/CH/CHS4-A/CHS411Q.Seq.d/                         42   0.010

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M33861|M33861.1 Dictyostelium discoideum spore germination-specific protein gene, complete cds.   716   0.0    1
AC183544|AC183544.3 Pan troglodytes BAC clone CH251-284N17 from chromosome x, complete sequence.    50   0.073  1
AC079386|AC079386.23 Homo sapiens 12 BAC RP11-12K13 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   0.078  3
AC021516|AC021516.4 Homo sapiens chromosome 18 clone RP11-285M10 map 18, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44   0.31   3
EK241615|EK241615.1 1095460227867 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005673817 3', genomic survey sequence.    46   1.1    1
AC195274|AC195274.2 Zea mays chromosome 3 clone CH201-403P1; ZMMBBc0403P01, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    44   4.5    1
AC079974|AC079974.1 Homo sapiens chromosome 7 clone RP11-4K17 map 7, LOW-PASS SEQUENCE SAMPLING.    44   4.5    1
AL392171|AL392171.3 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP13-451D21.    44   4.5    1
AC023567|AC023567.2 Homo sapiens clone RP11-791E3, WORKING DRAFT SEQUENCE, 31 unordered pieces.    44   4.5    1
AC012241|AC012241.4 Homo sapiens chromosome 10 clone RP11-16G14 map 10, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44   4.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22699) RecName: Full=Endoglucanase;          EC=3.2.1.4; AltNa...   220   2e-56
AP009493_712(AP009493|pid:none) Streptomyces griseus subsp. gris...    35   2.0
(Q4R4J7) RecName: Full=Nucleolin;  &AB168220_1(AB168220|pid:none...    33   5.9
(P19338) RecName: Full=Nucleolin; AltName: Full=Protein C23;  &A...    33   5.9
AK127608_1(AK127608|pid:none) Homo sapiens cDNA FLJ45706 fis, cl...    33   5.9
(Q5RF26) RecName: Full=Nucleolin;  &CR857335_1(CR857335|pid:none)      33   5.9

 psg: 0.75  gvh: 0.27  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for VHE156 is cyt

>VHE156Z.Seq
NNNNNNNNNNCAANTGNGACTCCNAANTGAGACTCCCAANTGAGANTCCANCAGAGANTC
CAACAGAANCTCCANCAGAGACTCCAACAGAAACTCCAACAGAGACTCCAACAGAAACTC
CAACAGAAACTCCAACAGAAACTCCAACAGAAACTCCAACAGAAACTCCAACAGAAACTC
CAACCGAGACTCCAACTGAAACTGTTACTCCAACCCCAACAGTAACACCAACTGAAACTC
CATCAAGTGGAGAATCTTTATCAATCTATAAAAGTGGATTAAAAAATGATTTCCAAGATT
GGTCATGGGGTGAGCATTCATTAACTGATACAACAAATGTTGAATCTGGAGAAACCAATT
CAATTTCATTTACACCAAAAGCATATGGTGCAGTATTTTTAGGATGTTTCGAATGTATTG
ATACTGATACATACAATAATATTGAATTTGATATTAATGGTGGTAGCAGTGGTGCTCAAT
TATTAAGAATAACTGTTGTTAAAAATAGTAAATCTGTTGGTTCCAAATTAATTACCGATC
TTAATGGTGGAACTCCAATCGAAGNAAAAAAAANAAATAATAATAATGNTTCNAATAA