>VHK693 (VHK693Q) /CSM/VH/VHK6-D/VHK693Q.Seq.d/
XXXXXXXXXXTCAAGGTATGGAAATGCAAAAGAGAATAACCAACTATCGTCCATCATGGA
ATTTAACCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACA
TTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTG
CATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATG
GTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGA
TTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTAT
CACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTC
AATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGA
TTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATA
TTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAA
CTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAA
AATTATCAAATTTATCAAGATTAAAATGGAAAACT

---QGMEMQKRITNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKT

Frame A:
---QGMEMQKRITNYRPSWNLTVVQPTSGNYVPVNAIAYIQDPNQSLQFTIVTDRSRGCA
SLRDGQLDMMMHRRTLKDDGRGVGQPMNESTQIVTTSKLIFHDISSYAQSHYRPAALSLS
HPLLPMFTTTQQSSNDWNSQYQGVYSPLTSASPLPNGLKIQTLQWLDNQDNTILLRIENI
YQIDGQDSQDPQTITLDLSTIFSTITITSATEMNLTGVQKLSNLSRLKWKT


Frame B:
---kvwkckre*ptivhhgi*pwfnqpvvimyl*mllptfkilinhynsplslievvdvh
r*emvnwi**civvl*kmmvvvlvnq*msqlkslqlvn*fsmifqvmlnliivllhslyh
ihysqclqplnnlqtigilnikvfthh*lqphlyqmv*rfklyng*iikiipyfyvlkif
iklmvkihkihklsl*ifqlsfqqlqsllqlk*i*lvfknyqiyqd*ngk


Frame C:
---rygnakennqlssimefnrgstnqw*lctcecyclhsrs*siitihhch**kswmci
vkrwsigyddassyfer*wswcwstne*vnsnryn**idfp*yfklcsislsscctlfit
sitpnvynhstifkrlefsisrclltidfsltftkwfkdsnstmvr*sr*yhtfty*kyl
sn*wsrftrstnyhfrsfnylfnnynhfcn*nefnwcskiikfikikmen

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ167 (VHQ167Q) /CSM/VH/VHQ1-C/VHQ167Q.Seq.d/                       1358   0.0
VHP443 (VHP443Q) /CSM/VH/VHP4-B/VHP443Q.Seq.d/                       1358   0.0
VHO790 (VHO790Q) /CSM/VH/VHO7-D/VHO790Q.Seq.d/                       1358   0.0
VHO689 (VHO689Q) /CSM/VH/VHO6-D/VHO689Q.Seq.d/                       1358   0.0
VHN172 (VHN172Q) /CSM/VH/VHN1-C/VHN172Q.Seq.d/                       1358   0.0
VHM666 (VHM666Q) /CSM/VH/VHM6-C/VHM666Q.Seq.d/                       1358   0.0
VHK693 (VHK693Q) /CSM/VH/VHK6-D/VHK693Q.Seq.d/                       1358   0.0
VHK690 (VHK690Q) /CSM/VH/VHK6-D/VHK690Q.Seq.d/                       1358   0.0
VHD562 (VHD562Q) /CSM/VH/VHD5-C/VHD562Q.Seq.d/                       1358   0.0
VHB462 (VHB462Q) /CSM/VH/VHB4-C/VHB462Q.Seq.d/                       1358   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M82822|M82822.1 Dictyostelium discoideum alpha-mannosidase (manA) gene, complete cds.  1334   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-04  15
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    32   7e-04  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.032  12
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   0.080  9
AE017268|AE017268.1 Bacillus cereus ATCC 10987, section 5 of 18 of the complete genome.    36   0.14   9
AL161912|AL161912.15 Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a novel pseudogene.    34   0.32   4
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    32   0.33   12
AP000962|AP000962.2 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B821P16, LL56-APP region.    40   0.42   4
AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence.    32   0.49   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M82822_1(M82822|pid:none) Dictyostelium discoideum alpha-mannosi...   391   e-107
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   391   e-107
BT036325_1(BT036325|pid:none) Zea mays full-length cDNA clone ZM...   107   3e-22
(Q29451) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   107   5e-22
AK068415_1(AK068415|pid:none) Oryza sativa Japonica Group cDNA c...   106   6e-22
AY099704_1(AY099704|pid:none) Arabidopsis thaliana alpha-mannosi...   101   2e-20
AB005230_20(AB005230|pid:none) Arabidopsis thaliana genomic DNA,...   101   2e-20
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...   101   2e-20
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,...   100   4e-20
AK291572_1(AK291572|pid:none) Homo sapiens cDNA FLJ76867 complet...   100   6e-20

 psg: 0.64  gvh: 0.51  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHK693 is cyt

>VHK693Z.Seq
NNNNNNNNNNTCAAGGTATGGAAATGCAAAAGAGAATAACCAACTATCGTCCATCATGGA
ATTTAACCGTGGTTCAACCAACCAGTGGTAATTATGTACCTGTGAATGCTATTGCCTACA
TTCAAGATCCTAATCAATCATTACAATTCACCATTGTCACTGATAGAAGTCGTGGATGTG
CATCGTTAAGAGATGGTCAATTGGATATGATGATGCATCGTCGTACTTTGAAAGATGATG
GTCGTGGTGTTGGTCAACCAATGAATGAGTCAACTCAAATCGTTACAACTAGTAAATTGA
TTTTCCATGATATTTCAAGTTATGCTCAATCTCATTATCGTCCTGCTGCACTCTCTTTAT
CACATCCATTACTCCCAATGTTTACAACCACTCAACAATCTTCAAACGATTGGAATTCTC
AATATCAAGGTGTTTACTCACCATTGACTTCAGCCTCACCTTTACCAAATGGTTTAAAGA
TTCAAACTCTACAATGGTTAGATAATCAAGATAATACCATACTTTTACGTATTGAAAATA
TTTATCAAATTGATGGTCAAGATTCACAAGATCCACAAACTATCACTTTAGATCTTTCAA
CTATCTTTTCAACAATTACAATCACTTCTGCAACTGAAATGAATTTAACTGGTGTTCAAA
AATTATCAAATTTATCAAGATTAAAATGGAAAACT