>VHK755 (VHK755Q) /CSM/VH/VHK7-C/VHK755Q.Seq.d/
XXXXXXXXXXTTGGTAGATTCTCAAAAATCCNTGGTCCATGGAGAGGTTTGGGTGAAGGT
AAACACCAAACTGGTCAAGGTTCACTCATTGTTCCAAGAAATCAACCAAATCAACAACAA
AGAATTAAACAAAGAGATGATGAAATTTATGAAGACTTATTAGAAGATGGCGATGAAGAT
TTTGAAACTATTGAAAAATTCAAAGATATATCAAATGAATTCCCAAAAACAGCTCCACCA
AAATTCTTTAATAGAGAAGAAGTTTATCAAAATAAAATTGAAAAGAGAGCAGTTGCTGAA
TTATTAGTAAAGAAAAAGATTTTAGAAACTTATAAAGGACCACCAACAAAAGATGGTTTA
CCACGTGTTAAATTCAATCCAAATGTAAAATCACGTGAATCAAAAATCTCAAAGATTGTT
GTAGATAGAAAGGGTGAAATTCATGATCTACCCCATTTAACCGATTTTAAAGAGGGTCAA
TATCATCAAGTACTTGATGATTTCGATAGAAAACGTGCACTCAAAAGAGGTGTTGGT

---GRFSKIXGPWRGLGEGKHQTGQGSLIVPRNQPNQQQRIKQRDDEIYEDLLEDGDEDF
ETIEKFKDISNEFPKTAPPKFFNREEVYQNKIEKRAVAELLVKKKILETYKGPPTKDGLP
RVKFNPNVKSRESKISKIVVDRKGEIHDLPHLTDFKEGQYHQVLDDFDRKRALKRGVG

Frame A:
---w*ilknpwsmerfg*r*tpnwsrfthcskkstksttkn*tkr**nl*rlirrwr*rf
*ny*kiqryik*ipknsstkil**rrslsk*n*kessc*iiskekdfrnl*rttnkrwft
tc*iqskckit*iknlkdccr*kg*ns*stpfnrf*rgsissst**fr*ktctqkrcw


Frame B:
---GRFSKIXGPWRGLGEGKHQTGQGSLIVPRNQPNQQQRIKQRDDEIYEDLLEDGDEDF
ETIEKFKDISNEFPKTAPPKFFNREEVYQNKIEKRAVAELLVKKKILETYKGPPTKDGLP
RVKFNPNVKSRESKISKIVVDRKGEIHDLPHLTDFKEGQYHQVLDDFDRKRALKRGVG


Frame C:
---vdsqksxvhgevwvkvntklvkvhslfqeinqinnkelnkemmkfmkty*kmamkil
kllknskiyqmnsqkqlhqnsliekkfikiklkreqllny**rkrf*klikdhqqkmvyh
vlnsiqm*nhvnqksqrll*iervkfmiypi*pilkrvniikylmisienvhskevl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHK755 (VHK755Q) /CSM/VH/VHK7-C/VHK755Q.Seq.d/                       1039   0.0
VFM204 (VFM204Q) /CSM/VF/VFM2-A/VFM204Q.Seq.d/                       1039   0.0
VHB122 (VHB122Q) /CSM/VH/VHB1-A/VHB122Q.Seq.d/                       1017   0.0
VHG525 (VHG525Q) /CSM/VH/VHG5-B/VHG525Q.Seq.d/                        948   0.0
VSG328 (VSG328Q) /CSM/VS/VSG3-B/VSG328Q.Seq.d/                         38   0.13
VHB455 (VHB455Q) /CSM/VH/VHB4-C/VHB455Q.Seq.d/                         38   0.13
VFE829 (VFE829Q) /CSM/VF/VFE8-B/VFE829Q.Seq.d/                         38   0.13
SHB842 (SHB842Q) /CSM/SH/SHB8-B/SHB842Q.Seq.d/                         38   0.13
SFG157 (SFG157Q) /CSM/SF/SFG1-C/SFG157Q.Seq.d/                         38   0.13
AHI151 (AHI151Q) /CSM/AH/AHI1-C/AHI151Q.Seq.d/                         38   0.13

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   2e-05  17
CC968230|CC968230.1 BOIFO15TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFO15, genomic survey sequence.    40   0.001  3
AC120038|AC120038.1 Homo sapiens chromosome 8 clone RP11-1150A11 map 8, LOW-PASS SEQUENCE SAMPLING.    34   0.014  4
AC147000|AC147000.6 Medicago truncatula clone mth2-124a16, WORKING DRAFT SEQUENCE, 15 unordered pieces.    36   0.020  6
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   0.021  8
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    38   0.021  10
AL139076|AL139076.2 Campylobacter jejuni NCTC11168 complete genome; segment 3/6.    32   0.024  13
AZ978534|AZ978534.1 2M0254J20R Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0254J20 R, DNA sequence.    50   0.033  1
AL670238|AL670238.5 Mouse DNA sequence from clone RP23-16J5 on chromosome X.    50   0.033  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    30   0.050  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017221_702(AE017221|pid:none) Thermus thermophilus HB27, compl...    35   1.2
(Q9QYR6) RecName: Full=Microtubule-associated protein 1A;       ...    34   2.1
AL845466_1(AL845466|pid:none) Mouse DNA sequence from clone RP23...    34   2.1
AF182211_1(AF182211|pid:none) Mus musculus microtubule-associate...    34   2.1
FM864216_342(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T...    34   2.7
AM502253_514(AM502253|pid:none) Leishmania infantum chromosome 35.     33   3.6
(P56690) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    33   3.6
BC028853_1(BC028853|pid:none) Mus musculus microtubule-associate...    33   3.6
(Q72JR6) RecName: Full=Isoleucyl-tRNA synthetase;          EC=6....    33   3.6
AM494957_207(AM494957|pid:none) Leishmania braziliensis chromoso...    33   4.7

 psg: 0.56  gvh: 0.27  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 20.0 %: mitochondrial

>> prediction for VHK755 is cyt

>VHK755Z.Seq
NNNNNNNNNNTTGGTAGATTCTCAAAAATCCNTGGTCCATGGAGAGGTTTGGGTGAAGGT
AAACACCAAACTGGTCAAGGTTCACTCATTGTTCCAAGAAATCAACCAAATCAACAACAA
AGAATTAAACAAAGAGATGATGAAATTTATGAAGACTTATTAGAAGATGGCGATGAAGAT
TTTGAAACTATTGAAAAATTCAAAGATATATCAAATGAATTCCCAAAAACAGCTCCACCA
AAATTCTTTAATAGAGAAGAAGTTTATCAAAATAAAATTGAAAAGAGAGCAGTTGCTGAA
TTATTAGTAAAGAAAAAGATTTTAGAAACTTATAAAGGACCACCAACAAAAGATGGTTTA
CCACGTGTTAAATTCAATCCAAATGTAAAATCACGTGAATCAAAAATCTCAAAGATTGTT
GTAGATAGAAAGGGTGAAATTCATGATCTACCCCATTTAACCGATTTTAAAGAGGGTCAA
TATCATCAAGTACTTGATGATTTCGATAGAAAACGTGCACTCAAAAGAGGTGTTGGT