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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHL486
Library VH
(Link to library)
Clone ID VHL486
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11038-1
Original site URL
Representative seq. ID VHL486P
(Link to Original site)
Representative DNA sequence 
>VHL486 (VHL486Q) /CSM/VH/VHL4-D/VHL486Q.Seq.d/
AATATATTTTATTTATATATTTATTTATATGTAAAAGATGGCAGGTAATTTAGAGAGGAT
ATTTGAAAAATGGCAAAGTTCATTGAGCGAACCTGATGATTTCATTTGGATTCAATCATC
AAAGAATAAAGTAGACCTCCTATTTAGAGGTGATGAAATTTCTATTTCATTTCCTTTAGA
TGTTAGTGACATTAAACAATTTCACTTTTCAAATAGATCAAATGACCAATGGATTGCAAA
TATTAATAAAGGAATTCAAAATGATTCATCAATTGTAACATTCTCTGATGTGTTAAATTT
GGCAGTTACCCAACATGATAGAAAAAATCAATCAATTAAAGAACCAACTAAAAAAGCAAA
ACACTCAAATGAAGAGGATAACAGTGATGAAGCTACAGAGGAAGATGGAGATGATGATAG
CAATAATATTAATGAAGATGAAGATGGCAAGGGTGAAGAAGATGATGATGATGATGATGA
TGACGATGACGACGATGAGGAGGAAGAAAATGATGATGATTTTGATATGGATGATGATAA
TTTCGAAAATGATGAATTTCAAXXXXXXXXXXTTATTCAATTGTACTTTTCCACAAGAGT
ATCCATNTAGTCCACCCCATGTCACCATTTTAACAACTGGTGGTGGTTCAGTTAGATTCA
ATCCAAATCTCTATAACAATGGTAAGGTTTGTCTATCACTTCTTGGTACTTGGGCTGGTA
GTTCCGGTGAAACTTGGAATTTAAATACTTCAACACTCCTACAGGTTTTCATTTCAATTC
AATCCTTGATTTTAGTACCTGAACCTTTCTTTAATGAACCTGGTTTCGAAAGTCAAATAG
GTACAAAGTCTGGTATTGCTTNTTCCTCATCCTATAATCATAATCTCATTCCTTCCACTA
TTCAATATGCTATGATCGAAATGATTCAAAATCCACCACCACCATTTAAAGATGTCATTC
TTGCTCACTTTTTCTATCAAAAAGATACTATCAAAAAACAATGTGACGCTTGGGTCAATG
AAATTAAAGAAGCAAAGAAAGACTATGCTAAAATTTTAAAACTTGTAAATACTTTAAATA
CTTTATTAAATAATTTAAAAGAACCTGTTGATTAAACCTTTTTTTAAAAAAAAAAATTTT
TAATATCAAATTGTCAAAAAATAATAATAATAATAATATCAAATAACATAATAATAGTAA
TAATAAAATAAATAAATAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iyfiyifiym*KMAGNLERIFEKWQSSLSEPDDFIWIQSSKNKVDLLFRGDEISISFPLD
VSDIKQFHFSNRSNDQWIANINKGIQNDSSIVTFSDVLNLAVTQHDRKNQSIKEPTKKAK
HSNEEDNSDEATEEDGDDDSNNINEDEDGKGEEDDDDDDDDDDDDEEEENDDDFDMDDDN
FENDEFQ---

---LFNCTFPQEYPXSPPHVTILTTGGGSVRFNPNLYNNGKVCLSLLGTWAGSSGETWNL
NTSTLLQVFISIQSLILVPEPFFNEPGFESQIGTKSGIAXSSSYNHNLIPSTIQYAMIEM
IQNPPPPFKDVILAHFFYQKDTIKKQCDAWVNEIKEAKKDYAKILKLVNTLNTLLNNLKE
PVD*tff*kkkflisncqkiiiiiisnniiiviik*ink*
Translated Amino Acid sequence (All Frames) 
Frame A:
nifylyiylyvkdgr*fredi*kmakfiert**fhldsiike*srppi*r**nfyfisfr
c**h*tislfk*ik*pmdcky**rnsk*fincnil*cvkfgsypt**kksin*rtn*ksk
tlk*rg*q**syrgrwr***q*y**r*rwqg*rr*******r*rr*ggrk***f*yg***
frk**is---

---LFNCTFPQEYPXSPPHVTILTTGGGSVRFNPNLYNNGKVCLSLLGTWAGSSGETWNL
NTSTLLQVFISIQSLILVPEPFFNEPGFESQIGTKSGIAXSSSYNHNLIPSTIQYAMIEM
IQNPPPPFKDVILAHFFYQKDTIKKQCDAWVNEIKEAKKDYAKILKLVNTLNTLLNNLKE
PVD*tff*kkkflisncqkiiiiiisnniiiviik*ink*

Frame B:
iyfiyifiym*KMAGNLERIFEKWQSSLSEPDDFIWIQSSKNKVDLLFRGDEISISFPLD
VSDIKQFHFSNRSNDQWIANINKGIQNDSSIVTFSDVLNLAVTQHDRKNQSIKEPTKKAK
HSNEEDNSDEATEEDGDDDSNNINEDEDGKGEEDDDDDDDDDDDDEEEENDDDFDMDDDN
FENDEFQ---

---ysivlfhksihxvhpmspf*qlvvvqldsiqisitmvrfvyhflvlglvvpvklgi*
ilqhsyrfsfqfnp*f*ylnlslmnlvskvk*vqslvllxphpiiiisflplfnml*sk*
fkihhhhlkmsflltfsikkilsknnvtlgsmklkkqrktmlkf*nl*il*ily*ii*kn
llikpffkkknf*yqivkk*****yqit******nk*ink

Frame C:
yilfiylfickrwqvi*rgylkngkvh*anlmisfgfnhqrik*tsylevmkflfhfl*m
lvtlnnftfqidqmtnglqilikefkmihql*hslmc*iwqlpnmiekinqlknqlkkqn
tqmkritvmklqrkmemmiaiilmkmkmarvkkmmmmmmmtmttmrrkkmmmiliwmmii
skmmnf---

---iqlyfstrvsx*stpchhfnnwwwfs*iqsksl*qw*glsitswylgw*fr*nlefk
yfntptgfhfnsildfst*tfl**twfrksnrykvwycxflil*s*shsfhysicydrnd
sksttti*rchscslflskryyqktm*rlgq*n*rskerlc*nfktckyfkyfik*fkrt
c*lnlflkkkifniklsknnnnnnik*hnnsnnkink*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL486 (VHL486Q) /CSM/VH/VHL4-D/VHL486Q.Seq.d/                       1086   0.0
VHO431 (VHO431Q) /CSM/VH/VHO4-B/VHO431Q.Seq.d/                       1070   0.0
SHK589 (SHK589Q) /CSM/SH/SHK5-D/SHK589Q.Seq.d/                       1070   0.0
SHC876 (SHC876Q) /CSM/SH/SHC8-D/SHC876Q.Seq.d/                       1063   0.0
SHB482 (SHB482Q) /CSM/SH/SHB4-D/SHB482Q.Seq.d/                       1059   0.0
AHH679 (AHH679Q) /CSM/AH/AHH6-D/AHH679Q.Seq.d/                       1059   0.0
AHD234 (AHD234Q) /CSM/AH/AHD2-B/AHD234Q.Seq.d/                       1059   0.0
AHA462 (AHA462Q) /CSM/AH/AHA4-C/AHA462Q.Seq.d/                       1053   0.0
CHR859 (CHR859Q) /CSM/CH/CHR8-C/CHR859Q.Seq.d/                       1041   0.0
AFL183 (AFL183Q) /CSM/AF/AFL1-D/AFL183Q.Seq.d/                       1023   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   916   0.0    5
(BJ443725) Dictyostelium discoideum cDNA clone:ddv53l22, 3' ...   932   0.0    2
(BJ408413) Dictyostelium discoideum cDNA clone:dds45a23, 3' ...   916   0.0    2
(BJ445426) Dictyostelium discoideum cDNA clone:ddv59n08, 3' ...   916   0.0    2
(BJ404856) Dictyostelium discoideum cDNA clone:dds29h20, 3' ...   908   0.0    2
(BJ409553) Dictyostelium discoideum cDNA clone:dds42b17, 3' ...   908   0.0    2
(BJ403939) Dictyostelium discoideum cDNA clone:dds26d22, 3' ...   904   0.0    2
(BJ352486) Dictyostelium discoideum cDNA clone:dda46m20, 3' ...   904   0.0    2
(BJ349667) Dictyostelium discoideum cDNA clone:dda37c10, 3' ...   904   0.0    2
(BJ347932) Dictyostelium discoideum cDNA clone:dda31l16, 3' ...   898   0.0    2
dna update 2008.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_103(AC116957|pid:none) Dictyostelium discoideum chromos...   332   2e-89
(Q9NR09) RecName: Full=Baculoviral IAP repeat-containing protein...   182   2e-44
AK023848_1(AK023848|pid:none) Homo sapiens cDNA FLJ13786 fis, cl...   182   2e-44
AB033115_1(AB033115|pid:none) Homo sapiens mRNA for KIAA1289 pro...   182   2e-44
T31067(T31067) BIR repeat containing ubiquitin-conjugating enzym...   181   4e-44
AK117792_1(AK117792|pid:none) Arabidopsis thaliana At1g53020 mRN...   133   1e-29
(Q9LUQ5) RecName: Full=Probable ubiquitin carrier protein E2 25;...   132   2e-29
AE017352_218(AE017352|pid:none) Cryptococcus neoformans var. neo...   132   3e-29
AP002481_1(AP002481|pid:none) Oryza sativa Japonica Group genomi...   130   1e-28
EF147689_1(EF147689|pid:none) Populus trichocarpa clone WS0124_F...   127   1e-27
protein update 2009. 7.16
PSORT 

 psg: 0.60  gvh: 0.33  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHL486 is cyt
5' end seq. ID VHL486F
5' end seq. 
>VHL486F.Seq
AATATATTTTATTTATATATTTATTTATATGTAAAAGATGGCAGGTAATTTAGAGAGGAT
ATTTGAAAAATGGCAAAGTTCATTGAGCGAACCTGATGATTTCATTTGGATTCAATCATC
AAAGAATAAAGTAGACCTCCTATTTAGAGGTGATGAAATTTCTATTTCATTTCCTTTAGA
TGTTAGTGACATTAAACAATTTCACTTTTCAAATAGATCAAATGACCAATGGATTGCAAA
TATTAATAAAGGAATTCAAAATGATTCATCAATTGTAACATTCTCTGATGTGTTAAATTT
GGCAGTTACCCAACATGATAGAAAAAATCAATCAATTAAAGAACCAACTAAAAAAGCAAA
ACACTCAAATGAAGAGGATAACAGTGATGAAGCTACAGAGGAAGATGGAGATGATGATAG
CAATAATATTAATGAAGATGAAGATGGCAAGGGTGAAGAAGATGATGATGATGATGATGA
TGACGATGACGACGATGAGGAGGAAGAAAATGATGATGATTTTGATATGGATGATGATAA
TTTCGAAAATGATGAATTTCAANNNNNNNNNN
Length of 5' end seq. 572
3' end seq. ID VHL486Z
3' end seq. 
>VHL486Z.Seq
NNNNNNNNNNTTATTCAATTGTACTTTTCCACAAGAGTATCCATNTAGTCCACCCCATGT
CACCATTTTAACAACTGGTGGTGGTTCAGTTAGATTCAATCCAAATCTCTATAACAATGG
TAAGGTTTGTCTATCACTTCTTGGTACTTGGGCTGGTAGTTCCGGTGAAACTTGGAATTT
AAATACTTCAACACTCCTACAGGTTTTCATTTCAATTCAATCCTTGATTTTAGTACCTGA
ACCTTTCTTTAATGAACCTGGTTTCGAAAGTCAAATAGGTACAAAGTCTGGTATTGCTTN
TTCCTCATCCTATAATCATAATCTCATTCCTTCCACTATTCAATATGCTATGATCGAAAT
GATTCAAAATCCACCACCACCATTTAAAGATGTCATTCTTGCTCACTTTTTCTATCAAAA
AGATACTATCAAAAAACAATGTGACGCTTGGGTCAATGAAATTAAAGAAGCAAAGAAAGA
CTATGCTAAAATTTTAAAACTTGTAAATACTTTAAATACTTTATTAAATAATTTAAAAGA
ACCTGTTGATTAAACCTTTTTTTAAAAAAAAAAATTTTTAATATCAAATTGTCAAAAAAT
AATAATAATAATAATATCAAATAACATAATAATAGTAATAATAAAATAAATAAATAAATA
AA
Length of 3' end seq. 662
Connected seq. ID VHL486P
Connected seq. 
>VHL486P.Seq
AATATATTTTATTTATATATTTATTTATATGTAAAAGATGGCAGGTAATTTAGAGAGGAT
ATTTGAAAAATGGCAAAGTTCATTGAGCGAACCTGATGATTTCATTTGGATTCAATCATC
AAAGAATAAAGTAGACCTCCTATTTAGAGGTGATGAAATTTCTATTTCATTTCCTTTAGA
TGTTAGTGACATTAAACAATTTCACTTTTCAAATAGATCAAATGACCAATGGATTGCAAA
TATTAATAAAGGAATTCAAAATGATTCATCAATTGTAACATTCTCTGATGTGTTAAATTT
GGCAGTTACCCAACATGATAGAAAAAATCAATCAATTAAAGAACCAACTAAAAAAGCAAA
ACACTCAAATGAAGAGGATAACAGTGATGAAGCTACAGAGGAAGATGGAGATGATGATAG
CAATAATATTAATGAAGATGAAGATGGCAAGGGTGAAGAAGATGATGATGATGATGATGA
TGACGATGACGACGATGAGGAGGAAGAAAATGATGATGATTTTGATATGGATGATGATAA
TTTCGAAAATGATGAATTTCAA----------TTATTCAATTGTACTTTTCCACAAGAGT
ATCCATNTAGTCCACCCCATGTCACCATTTTAACAACTGGTGGTGGTTCAGTTAGATTCA
ATCCAAATCTCTATAACAATGGTAAGGTTTGTCTATCACTTCTTGGTACTTGGGCTGGTA
GTTCCGGTGAAACTTGGAATTTAAATACTTCAACACTCCTACAGGTTTTCATTTCAATTC
AATCCTTGATTTTAGTACCTGAACCTTTCTTTAATGAACCTGGTTTCGAAAGTCAAATAG
GTACAAAGTCTGGTATTGCTTNTTCCTCATCCTATAATCATAATCTCATTCCTTCCACTA
TTCAATATGCTATGATCGAAATGATTCAAAATCCACCACCACCATTTAAAGATGTCATTC
TTGCTCACTTTTTCTATCAAAAAGATACTATCAAAAAACAATGTGACGCTTGGGTCAATG
AAATTAAAGAAGCAAAGAAAGACTATGCTAAAATTTTAAAACTTGTAAATACTTTAAATA
CTTTATTAAATAATTTAAAAGAACCTGTTGATTAAACCTTTTTTTAAAAAAAAAAATTTT
TAATATCAAATTGTCAAAAAATAATAATAATAATAATATCAAATAACATAATAATAGTAA
TAATAAAATAAATAAATAAATAAA
Length of connected seq. 1214
Full length Seq ID -
Full length Seq. -
Length of full length seq. -