>VHM210 (VHM210Q) /CSM/VH/VHM2-A/VHM210Q.Seq.d/
AATTTCGTTTTACCAGCAGAGTTCAAATTATTATTAACCAATTTACCAAATTTAGAATTG
AAATTCAAATATGAAGAGAATGAAATCACTCCATTAATTTATGCTATCAATATTAAAAAC
ATTGGTTTAATTGGTACTTTATTGAATTCAAAAGCAAACATCAATACAGTCGATGCACTT
GGTCAACCACCACTTTTCCATGCAGTTAAAACAAATAAAATGGATATTGTCAACTTGATA
CTCTCAAAGAAACCAAATATGAATATTCAAGATACCGATAAGAAATCTGTTATTCATTAT
GTAGTTAATCCAACTGAATATGGTTCATTTGAAAATGTTACCCTTTTGAATCTATTGGCT
AAACAAGGTTCTAAAATCGATTTAGCAGATATCGCTGGTAAAACACCATTATACTATGCA
TCATTACAAGATTCTGGTAAGATGAAAGACGCTTTAATTAAATTGGGTGCAAAGAAGATT
CCTCAAGAAACTTTACCAACTAGAGAAGTTTCAACCATTTCCAATTGGTCAGAGCTTAAT
ACAGTCAATTATGAACAAGATTATAATAAATACATTGAAACCAAGAAAGAATTAATGGCT
GCAAGCAATAAACAATTGAAACCACTCGTTGATCCAATCTCAAGAXXXXXXXXXX

NFVLPAEFKLLLTNLPNLELKFKYEENEITPLIYAINIKNIGLIGTLLNSKANINTVDAL
GQPPLFHAVKTNKMDIVNLILSKKPNMNIQDTDKKSVIHYVVNPTEYGSFENVTLLNLLA
KQGSKIDLADIAGKTPLYYASLQDSGKMKDALIKLGAKKIPQETLPTREVSTISNWSELN
TVNYEQDYNKYIETKKELMAASNKQLKPLVDPIS---

Frame A:
NFVLPAEFKLLLTNLPNLELKFKYEENEITPLIYAINIKNIGLIGTLLNSKANINTVDAL
GQPPLFHAVKTNKMDIVNLILSKKPNMNIQDTDKKSVIHYVVNPTEYGSFENVTLLNLLA
KQGSKIDLADIAGKTPLYYASLQDSGKMKDALIKLGAKKIPQETLPTREVSTISNWSELN
TVNYEQDYNKYIETKKELMAASNKQLKPLVDPIS---


Frame B:
isfyqqssnyy*piyqi*n*nsnmkrmkslh*fmlsilktlv*lvly*iqkqtsiqsmhl
vnhhfsmqlkqikwilst*ysqrnqi*ifkipirnllfim*liqlnmvhlkmlpf*iywl
nkvlksi*qislvkhhytmhhykilvr*ktl*lnwvqrrflkklyqlekfqpfpigqsli
qsimnkiiintlkprkn*wlqainn*nhsliqsq---


Frame C:
frftsrvqiiinqftkfrieiqi*re*nhsinlcyqy*khwfnwyfiefkskhqysrctw
stttfpcs*nk*ngycqldtlketkyeysryr*eicyslcs*sn*iwfi*kcypfesig*
trf*nrfsryrw*ntiilciitrfw*derrfn*igckedssrnftn*rsfnhfqlvra*y
sql*trl**ih*nqeringckq*tiettr*snlk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM210 (VHM210Q) /CSM/VH/VHM2-A/VHM210Q.Seq.d/                       1279   0.0
SLB163 (SLB163Q) /CSM/SL/SLB1-C/SLB163Q.Seq.d/                       1098   0.0
CHK610 (CHK610Q) /CSM/CH/CHK6-A/CHK610Q.Seq.d/                        892   0.0
VHD729 (VHD729Q) /CSM/VH/VHD7-B/VHD729Q.Seq.d/                        440   e-122
SFK395 (SFK395Q) /CSM/SF/SFK3-D/SFK395Q.Seq.d/                         38   0.16
VHF494 (VHF494Q) /CSM/VH/VHF4-D/VHF494Q.Seq.d/                         36   0.65
VHC427 (VHC427Q) /CSM/VH/VHC4-B/VHC427Q.Seq.d/                         36   0.65
FC-BI05 (FC-BI05Q) /CSM/FC/FC-BI/FC-BI05Q.Seq.d/                       36   0.65
AHA141 (AHA141Q) /CSM/AH/AHA1-B/AHA141Q.Seq.d/                         36   0.65
VSE866 (VSE866Q) /CSM/VS/VSE8-C/VSE866Q.Seq.d/                         34   2.6

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AJ534950) Dictyostelium discoideum mRNA for NAD(+) ADP-ribo...  1279   0.0    1
(BJ425222) Dictyostelium discoideum cDNA clone:ddv55c04, 5' ...  1279   0.0    1
(AU060700) Dictyostelium discoideum slug cDNA, clone SLB163.     1098   0.0    1
(BJ367518) Dictyostelium discoideum cDNA clone:ddc43c04, 5' ...   892   0.0    1
(BJ420141) Dictyostelium discoideum cDNA clone:ddv38j07, 5' ...   440   e-119  1
(AC202817) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    36   0.49   4
(AC188120) Trichinella spiralis chromosome UNK clone TS195-2...    44   0.72   4
(ER830799) POTN664TF Solanum tuberosum RHPOTKEY BAC ends Sol...    36   0.87   2
(EI321601) GM_WBc0057B22.f GM_WBc Glycine max genomic clone ...    46   1.6    1
(EI287751) GM_WBc0008B12.r GM_WBc Glycine max genomic clone ...    46   1.6    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ534950_1(AJ534950|pid:none) Dictyostelium discoideum mRNA for ...   387   e-106
AM999887_1278(AM999887|pid:none) Wolbachia endosymbiont of Culex...    79   9e-14
AY649751_1(AY649751|pid:none) Wolbachia pipientis strain wAu ank...    67   5e-10
AJ293568_11(AJ293568|pid:none) Yaba-like disease virus (YLDV), c...    67   6e-10
(Q8ZWC4) RecName: Full=Putative ankyrin repeat protein PAE1861; ...    67   6e-10
(Q1RHT6) RecName: Full=Putative ankyrin repeat protein RBE_0997;...    66   8e-10
EF420156_12(EF420156|pid:none) Tanapox virus isolate TPV-Kenya, ...    66   1e-09
CP001102_794(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    65   2e-09
BC166179_1(BC166179|pid:none) Xenopus tropicalis hypothetical pr...    65   2e-09
AY318871_11(AY318871|pid:none) Canarypox virus strain ATCC VR-11...    64   3e-09

 psg: 0.78  gvh: 0.45  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHM210 is cyt

>VHM210F.Seq
AATTTCGTTTTACCAGCAGAGTTCAAATTATTATTAACCAATTTACCAAATTTAGAATTG
AAATTCAAATATGAAGAGAATGAAATCACTCCATTAATTTATGCTATCAATATTAAAAAC
ATTGGTTTAATTGGTACTTTATTGAATTCAAAAGCAAACATCAATACAGTCGATGCACTT
GGTCAACCACCACTTTTCCATGCAGTTAAAACAAATAAAATGGATATTGTCAACTTGATA
CTCTCAAAGAAACCAAATATGAATATTCAAGATACCGATAAGAAATCTGTTATTCATTAT
GTAGTTAATCCAACTGAATATGGTTCATTTGAAAATGTTACCCTTTTGAATCTATTGGCT
AAACAAGGTTCTAAAATCGATTTAGCAGATATCGCTGGTAAAACACCATTATACTATGCA
TCATTACAAGATTCTGGTAAGATGAAAGACGCTTTAATTAAATTGGGTGCAAAGAAGATT
CCTCAAGAAACTTTACCAACTAGAGAAGTTTCAACCATTTCCAATTGGTCAGAGCTTAAT
ACAGTCAATTATGAACAAGATTATAATAAATACATTGAAACCAAGAAAGAATTAATGGCT
GCAAGCAATAAACAATTGAAACCACTCGTTGATCCAATCTCAAGANNNNNNNNNN