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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHM247
Library VH
(Link to library)
Clone ID VHM247
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12531-1
Original site URL
Representative seq. ID VHM247P
(Link to Original site)
Representative DNA sequence 
>VHM247 (VHM247Q) /CSM/VH/VHM2-B/VHM247Q.Seq.d/
AAGAAATAGTCGTTAAAAAGATAGAGGATAAAAAACAAGAAACAGAACCATTCAATATTG
ATGATTTAGATTTAGATGATTTAGATGCACAACTTGATAGTGTAATAAATGATTACGAAA
CAACAGAAGTTATAAATATTAAAGATGATTTTATTAGAATTCAAAATGAAATCTCTAAAC
AACATTTCGATCGATTTGGTGCAGATGAATCAATTGTTACAACCTTTAATCCTAATGAAC
TTCTTCTAAAGAGGAGAGAGGGAGAAAAAATGGAAGAAGATGAAAATCAAATAGAAGAAC
GTGAAGAAAAAGAAGAATCAGAAGAAGAAGATGATGATGAATCAGAAGAAGAAGAATCAG
AAGAATCAGAAGAAGAAGAAATTGCTGATTATGAAGAATCAAATGAAATTGAACAAAAAT
TAGATACAAATCAATTTAATCCACAGGATAGAAAAGTTTCATTTTTAATTCGTCCTCATG
GTGGAAAAGCAAGTAGAAATCTTCTTATAAAGACTAATGCTAATATTGATTTGAGAAATT
TAATTTGTAAATTTAAAGAACATGGTGAAATTAAATCAGTTTATCAAAATATTACAAGAT
CTGGTACAATGCATGTTGTXXXXXXXXXXATTATAANAATAAAAACTTTGGAATACCACC
ATTAAATGTTTCNCAACTTTACAATAATTCAAAATCATCACCAACTCAAAGTCCAAGATA
TTCACATGACCAACAACAACAGCANCAACAACAACATTCATCACAACCAACATCTCCACA
TGTTTCAAAATCTGGTAGTAGCGGTAGTTTTGAAGGANCAGATGATAGTCATATTATCAA
TTTGGATGATATTNGTAGTGGAGTAAATCAAAAAACTACTGTTATGATTAANAATATTCC
ATACAAATTCACTCATTTAAATTTAGATACAATGTTTAAAAAACATAATTTAGCTTATGA
TTATTTATATATGCCAACTGATCCAATTACAAAGGCACATTATGGATACACTTTCGTTNA
TTTCGTAAATTATCAAGACATCATTCAATTATGTTCACTTTACAATAATAAAAAATTGGG
TAACCATCCAAAGTTTTGTGAAATAACTTATGCAAGACTCCAAGGTTTTCCTCNNACTTC
AGCCNCTGNAGCAAATAATAATAATATAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
EIVVKKIEDKKQETEPFNIDDLDLDDLDAQLDSVINDYETTEVINIKDDFIRIQNEISKQ
HFDRFGADESIVTTFNPNELLLKRREGEKMEEDENQIEEREEKEESEEEDDDESEEEESE
ESEEEEIADYEESNEIEQKLDTNQFNPQDRKVSFLIRPHGGKASRNLLIKTNANIDLRNL
ICKFKEHGEIKSVYQNITRSGTMHV---

---YXNKNFGIPPLNVSQLYNNSKSSPTQSPRYSHDQQQQXQQQHSSQPTSPHVSKSGSS
GSFEGXDDSHIINLDDIXSGVNQKTTVMIXNIPYKFTHLNLDTMFKKHNLAYDYLYMPTD
PITKAHYGYTFVXFVNYQDIIQLCSLYNNKKLGNHPKFCEITYARLQGFPXTSAXXANNN
NII
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*slkr*riknkkqnhsilmi*i*mi*mhnliv**mitkqqkl*ilkmillefkmksln
nisidlvqmnqllqplilmnff*rgerekkwkkmkik*knvkkkknqkkkmmmnqkkknq
knqkkkkllimknqmklnkn*iqinlihriekfhf*fvlmvekqveifl*rlmlili*ei
*fvnlknmvklnqfikilqdlvqcml---

---iixiktleyhh*mfxnftiiqnhhqlkvqdihmtnnnsxnnnihhnqhlhmfqnlvv
avvlkxqmivilsiwmixvve*ikklll*lxifhtnsli*i*iqclknii*lmiiyicql
iqlqrhimdtlsxis*iiktsfnyvhftiiknwvtiqsfvk*lmqdskvflxlqplxqii
ii*

Frame B:
rnsr*kdrg*ktrnrtiqy**frfr*frctt**cnk*lrnnrsyky*r*fy*nsk*nl*t
tfrsiwcr*incynl*s**tsskeergrkngrr*ksnrrt*rkrrirrrr***irrrrir
rirrrrnc*l*rik*n*tkiryksi*stg*ksfifnssswwksk*kssykd*c*y*fekf
nl*i*rtw*n*islskyykiwynacc---

---l*x*klwnttikcfxtlq*fkiitnskskift*ptttaxtttfittnistcfkiw**
r*f*rxr**syyqfg*yx*wsksknycyd*xysiqihsfkfrynv*kt*fsl*lfiyan*
snykgtlwihfrxfrklsrhhsimftlq**kig*pskvl*nnlcktprfssxfsxxsk**
*yn

Frame C:
EIVVKKIEDKKQETEPFNIDDLDLDDLDAQLDSVINDYETTEVINIKDDFIRIQNEISKQ
HFDRFGADESIVTTFNPNELLLKRREGEKMEEDENQIEEREEKEESEEEDDDESEEEESE
ESEEEEIADYEESNEIEQKLDTNQFNPQDRKVSFLIRPHGGKASRNLLIKTNANIDLRNL
ICKFKEHGEIKSVYQNITRSGTMHV---

---YXNKNFGIPPLNVSQLYNNSKSSPTQSPRYSHDQQQQXQQQHSSQPTSPHVSKSGSS
GSFEGXDDSHIINLDDIXSGVNQKTTVMIXNIPYKFTHLNLDTMFKKHNLAYDYLYMPTD
PITKAHYGYTFVXFVNYQDIIQLCSLYNNKKLGNHPKFCEITYARLQGFPXTSAXXANNN
NII
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHM247 (VHM247Q) /CSM/VH/VHM2-B/VHM247Q.Seq.d/                       1378   0.0
VSK324 (VSK324Q) /CSM/VS/VSK3-A/VSK324Q.Seq.d/                         52   2e-05
SSE710 (SSE710Q) /CSM/SS/SSE7-A/SSE710Q.Seq.d/                         48   3e-04
SSA144 (SSA144Q) /CSM/SS/SSA1-B/SSA144Q.Seq.d/                         48   3e-04
SLD293 (SLD293Q) /CSM/SL/SLD2-D/SLD293Q.Seq.d/                         48   3e-04
SFE853 (SFE853Q) /CSM/SF/SFE8-C/SFE853Q.Seq.d/                         48   3e-04
VSK435 (VSK435Q) /CSM/VS/VSK4-B/VSK435Q.Seq.d/                         46   0.001
VSJ678 (VSJ678Q) /CSM/VS/VSJ6-D/VSJ678Q.Seq.d/                         46   0.001
VSJ123 (VSJ123Q) /CSM/VS/VSJ1-A/VSJ123Q.Seq.d/                         46   0.001
VSG324 (VSG324Q) /CSM/VS/VSG3-A/VSG324Q.Seq.d/                         46   0.001
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ444154) Dictyostelium discoideum cDNA clone:ddv55m12, 3' ...   708   0.0    2
(BJ425345) Dictyostelium discoideum cDNA clone:ddv55m12, 5' ...   490   0.0    2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    40   0.020  9
(DX984431) CHORI103-2E17.TV CHORI103 Schistosoma mansoni gen...    38   0.15   2
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.76   1
(AP003331) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.76   1
(EE263958) D07_D07gf4n14_pDNRf_505927 Myzus persicae, line G...    48   0.76   1
(DW014216) w7k20_M13F Myzus persicae, tobacco lineage, whole...    48   0.76   1
(DW014077) w7d4_M13F Myzus persicae, tobacco lineage, whole ...    48   0.76   1
(DT970061) CLJ126-C09.x1d-t SHGC-CLJ Gasterosteus aculeatus ...    48   0.76   1
dna update 2008.11.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF676232_1(EF676232|pid:none) Picea sitchensis clone WS02723_C16...    69   4e-10
BT067187_1(BT067187|pid:none) Zea mays full-length cDNA clone ZM...    69   4e-10
AY579881_1(AY579881|pid:none) Medicago truncatula AML1 mRNA, com...    68   5e-10
AB244279_1(AB244279|pid:none) Oryza sativa Japonica Group OML4 m...    68   7e-10
AB022212_9(AB022212|pid:none) Arabidopsis thaliana genomic DNA, ...    67   2e-09
AK316683_1(AK316683|pid:none) Arabidopsis thaliana AT5G61960 mRN...    67   2e-09
AB244278_1(AB244278|pid:none) Oryza sativa Japonica Group OML3 m...    66   3e-09
AY579887_1(AY579887|pid:none) Citrus unshiu AML1 mRNA, complete ...    66   3e-09
AC158464_2(AC158464|pid:none) Medicago truncatula chromosome 2 c...    65   4e-09
AK319074_1(AK319074|pid:none) Arabidopsis thaliana AT4G18120 mRN...    65   4e-09
protein update 2009. 7.16
PSORT 

 psg: 0.57  gvh: 0.24  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHM247 is nuc
5' end seq. ID VHM247F
5' end seq. 
>VHM247F.Seq
AAGAAATAGTCGTTAAAAAGATAGAGGATAAAAAACAAGAAACAGAACCATTCAATATTG
ATGATTTAGATTTAGATGATTTAGATGCACAACTTGATAGTGTAATAAATGATTACGAAA
CAACAGAAGTTATAAATATTAAAGATGATTTTATTAGAATTCAAAATGAAATCTCTAAAC
AACATTTCGATCGATTTGGTGCAGATGAATCAATTGTTACAACCTTTAATCCTAATGAAC
TTCTTCTAAAGAGGAGAGAGGGAGAAAAAATGGAAGAAGATGAAAATCAAATAGAAGAAC
GTGAAGAAAAAGAAGAATCAGAAGAAGAAGATGATGATGAATCAGAAGAAGAAGAATCAG
AAGAATCAGAAGAAGAAGAAATTGCTGATTATGAAGAATCAAATGAAATTGAACAAAAAT
TAGATACAAATCAATTTAATCCACAGGATAGAAAAGTTTCATTTTTAATTCGTCCTCATG
GTGGAAAAGCAAGTAGAAATCTTCTTATAAAGACTAATGCTAATATTGATTTGAGAAATT
TAATTTGTAAATTTAAAGAACATGGTGAAATTAAATCAGTTTATCAAAATATTACAAGAT
CTGGTACAATGCATGTTGTNNNNNNNNNN
Length of 5' end seq. 629
3' end seq. ID VHM247Z
3' end seq. 
>VHM247Z.Seq
NNNNNNNNNNATTATAANAATAAAAACTTTGGAATACCACCATTAAATGTTTCNCAACTT
TACAATAATTCAAAATCATCACCAACTCAAAGTCCAAGATATTCACATGACCAACAACAA
CAGCANCAACAACAACATTCATCACAACCAACATCTCCACATGTTTCAAAATCTGGTAGT
AGCGGTAGTTTTGAAGGANCAGATGATAGTCATATTATCAATTTGGATGATATTNGTAGT
GGAGTAAATCAAAAAACTACTGTTATGATTAANAATATTCCATACAAATTCACTCATTTA
AATTTAGATACAATGTTTAAAAAACATAATTTAGCTTATGATTATTTATATATGCCAACT
GATCCAATTACAAAGGCACATTATGGATACACTTTCGTTNATTTCGTAAATTATCAAGAC
ATCATTCAATTATGTTCACTTTACAATAATAAAAAATTGGGTAACCATCCAAAGTTTTGT
GAAATAACTTATGCAAGACTCCAAGGTTTTCCTCNNACTTCAGCCNCTGNAGCAAATAAT
AATAATATAATA
Length of 3' end seq. 552
Connected seq. ID VHM247P
Connected seq. 
>VHM247P.Seq
AAGAAATAGTCGTTAAAAAGATAGAGGATAAAAAACAAGAAACAGAACCATTCAATATTG
ATGATTTAGATTTAGATGATTTAGATGCACAACTTGATAGTGTAATAAATGATTACGAAA
CAACAGAAGTTATAAATATTAAAGATGATTTTATTAGAATTCAAAATGAAATCTCTAAAC
AACATTTCGATCGATTTGGTGCAGATGAATCAATTGTTACAACCTTTAATCCTAATGAAC
TTCTTCTAAAGAGGAGAGAGGGAGAAAAAATGGAAGAAGATGAAAATCAAATAGAAGAAC
GTGAAGAAAAAGAAGAATCAGAAGAAGAAGATGATGATGAATCAGAAGAAGAAGAATCAG
AAGAATCAGAAGAAGAAGAAATTGCTGATTATGAAGAATCAAATGAAATTGAACAAAAAT
TAGATACAAATCAATTTAATCCACAGGATAGAAAAGTTTCATTTTTAATTCGTCCTCATG
GTGGAAAAGCAAGTAGAAATCTTCTTATAAAGACTAATGCTAATATTGATTTGAGAAATT
TAATTTGTAAATTTAAAGAACATGGTGAAATTAAATCAGTTTATCAAAATATTACAAGAT
CTGGTACAATGCATGTTGT----------ATTATAANAATAAAAACTTTGGAATACCACC
ATTAAATGTTTCNCAACTTTACAATAATTCAAAATCATCACCAACTCAAAGTCCAAGATA
TTCACATGACCAACAACAACAGCANCAACAACAACATTCATCACAACCAACATCTCCACA
TGTTTCAAAATCTGGTAGTAGCGGTAGTTTTGAAGGANCAGATGATAGTCATATTATCAA
TTTGGATGATATTNGTAGTGGAGTAAATCAAAAAACTACTGTTATGATTAANAATATTCC
ATACAAATTCACTCATTTAAATTTAGATACAATGTTTAAAAAACATAATTTAGCTTATGA
TTATTTATATATGCCAACTGATCCAATTACAAAGGCACATTATGGATACACTTTCGTTNA
TTTCGTAAATTATCAAGACATCATTCAATTATGTTCACTTTACAATAATAAAAAATTGGG
TAACCATCCAAAGTTTTGTGAAATAACTTATGCAAGACTCCAAGGTTTTCCTCNNACTTC
AGCCNCTGNAGCAAATAATAATAATATAATA
Length of connected seq. 1161
Full length Seq ID -
Full length Seq. -
Length of full length seq. -