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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHN813
Library VH
(Link to library)
Clone ID VHN813
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10840-1
Original site URL
Representative seq. ID VHN813P
(Link to Original site)
Representative DNA sequence 
>VHN813 (VHN813Q) /CSM/VH/VHN8-A/VHN813Q.Seq.d/
AGTCATCAATATTGTGTGTATATGTATAATAATTGTGTATATTAGTGTATAATATATATC
TATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAAATCAAGTACATC
TGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAATGAAGTTGGTGT
TAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAATTCTATCAGTCAT
TTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGAAAGTGTTATTCA
TGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCAAGAAGGTTTTTA
TAATTTTTTAAATTGGTTTGATGAAAGAGCATGGTATCCATTAGGACGTATTGTAGGTGG
TACAATTTACCCAGGTTTAATGGCAACAGCAAGTTTAGTTCATTGGTCATTGAATTCATT
GAATATTACAGTTAATATTAGAAATGTATGTGTATTGTTATCACCATGGTTTGCATCAAA
TACAGCAATGGTAACCTATAAATTTGCCAAAGAAGTTAAGGATACACAAACTGGTTTGGT
TGCAGCAGCCATGATTGCAATTGTTXXXXXXXXXXTCTCTACGCTTTCCATTGTACTTGG
GTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAACGATGGT
AGTCGTGTGATTTTCGATGATTTCCGNTGAAGCCTACCGTTGGATTGGTCAAAATACTGC
CGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAATGGCCAA
TCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGTTGGTAA
AGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGTCGATTA
TGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAAATTCCT
TTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTATCTCAC
CAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCTCATGTA
CAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAACAGGTTT
CGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTTAGAAGA
AGCTTTCACATCTGTTCATTGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
sequence update 2002.10.25
Translated Amino Acid sequence 
vinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNIISSNEVGV
KEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTIYLVQEGFY
NFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVLLSPWFASN
TAMVTYKFAKEVKDTQTGLVAAAMIAIV---

---LYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFR*slpldwskycrrrsyyvlv
glwlsiicngqsyrig***hleq*syrssw*sicih*rrclhtnesigcrlcfsyfwwfn
wlqf**yq*ipldg*nww*l*sky*rtrlshqwsi*nr*rcltnnvkfshvqt*llsfl*
ssh*lsktnrfrsckkc*nw**kfrfnlfrrsfhicslvs*sl*s*rf
Translated Amino Acid sequence (All Frames) 
Frame A:
shqycvymynncvy*ciiyiyf*tdqq*eknekirkikyicc***qttrckyhqfk*swc
*rrk*rtsriliksfnsishlcfsifnsfilsitl*kcys*i*sif*l*inniscsrrfl
*ffklv**ksmvsirtycrwynlprfngnskfsslviefieyys*y*kcmcivitmvcik
ysngnl*icqrs*gytnwfgcsshdcnc---

---slrfplylgh**sllisihctlcqtkrw*scdfr*fpxkptvglvkilpttlvlclg
gimvinylqwpivpywliitlgtivislklvkhlhplkkmltyk*khwmsimf*lflvv*
lvtvlmisinsfgwlelvvvviqilknkiispmvnie*ikvphqqc*ilsctnlvtivsl
kftltikdqqvsiv*emlklvikisi*li*kklshlfig*lefiklki

Frame B:
vinivciciiivyisv*YISIFKQINNKKKMKRSEKSSTSVVSNNKQQDVNIISSNEVGV
KEENKGHQEFLLKVLILSVIYVLAFSTRLFSVLRYESVIHEFDPYFNYRSTIYLVQEGFY
NFLNWFDERAWYPLGRIVGGTIYPGLMATASLVHWSLNSLNITVNIRNVCVLLSPWFASN
TAMVTYKFAKEVKDTQTGLVAAAMIAIV---

---LYAFHCTWVTSEAYSSPSIVLSAKQNDGSRVIFDDFR*slpldwskycrrrsyyvlv
glwlsiicngqsyrig***hleq*syrssw*sicih*rrclhtnesigcrlcfsyfwwfn
wlqf**yq*ipldg*nww*l*sky*rtrlshqwsi*nr*rcltnnvkfshvqt*llsfl*
ssh*lsktnrfrsckkc*nw**kfrfnlfrrsfhicslvs*sl*s*rf

Frame C:
ssilcvyv**lcilvyniylflnrstirkk*kdqknqvhlllvitnnkm*issvqmklvl
kkkikdiknsy*kf*fyqsfmf*hfqlvysqyyvmkvlfmnlihiliidqqyilfkkvfi
if*iglmkehgih*dvl*vvqftqv*wqqqv*figh*ih*ilqlilemyvycyhhglhqi
qqw*pinlpkklrihklvwlqqp*lql---

---stlsivlgslvkpthlhplyslpnktmvvv*fsmisxeayrwigqntaddarimsww
dygyqlsamanrtvlvdnntwnnshiaqvgkafasteedayiqmkaldvdyvlvifgglt
gyssddinkflwmvriggscdpnikeqdyltngqyridkgasptmlnslmyklsyyrfse
vhtdyqrptgfdrvrnveignknfdltyleeaftsvhwlvrvykvkd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN813 (VHN813Q) /CSM/VH/VHN8-A/VHN813Q.Seq.d/                       2365   0.0
VHQ247 (VHQ247Q) /CSM/VH/VHQ2-B/VHQ247Q.Seq.d/                       1324   0.0
VHP856 (VHP856Q) /CSM/VH/VHP8-C/VHP856Q.Seq.d/                       1324   0.0
VHO701 (VHO701Q) /CSM/VH/VHO7-A/VHO701Q.Seq.d/                       1324   0.0
VHJ693 (VHJ693Q) /CSM/VH/VHJ6-D/VHJ693Q.Seq.d/                       1324   0.0
VHJ440 (VHJ440Q) /CSM/VH/VHJ4-B/VHJ440Q.Seq.d/                       1324   0.0
VHH649 (VHH649Q) /CSM/VH/VHH6-C/VHH649Q.Seq.d/                       1324   0.0
VHA140 (VHA140Q) /CSM/VH/VHA1-B/VHA140Q.Seq.d/                       1324   0.0
AHO126 (AHO126Q) /CSM/AH/AHO1-B/AHO126Q.Seq.d/                       1324   0.0
AHN309 (AHN309Q) /CSM/AH/AHN3-A/AHN309Q.Seq.d/                       1324   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445001) Dictyostelium discoideum cDNA clone:ddv58j04, 3' ...  1334   0.0    1
(BJ446770) Dictyostelium discoideum cDNA clone:ddv63e21, 3' ...  1118   0.0    2
(BJ446657) Dictyostelium discoideum cDNA clone:ddv63m12, 3' ...  1118   0.0    2
(BJ446434) Dictyostelium discoideum cDNA clone:ddv62p14, 3' ...  1118   0.0    2
(BJ445595) Dictyostelium discoideum cDNA clone:ddv60b01, 3' ...  1118   0.0    2
(BJ445300) Dictyostelium discoideum cDNA clone:ddv59f05, 3' ...  1118   0.0    2
(BJ442946) Dictyostelium discoideum cDNA clone:ddv51n07, 3' ...  1118   0.0    2
(BJ442751) Dictyostelium discoideum cDNA clone:ddv50i24, 3' ...  1118   0.0    2
(BJ442305) Dictyostelium discoideum cDNA clone:ddv49p10, 3' ...  1118   0.0    2
(BJ442123) Dictyostelium discoideum cDNA clone:ddv48l24, 3' ...  1118   0.0    2
dna update 2008.12. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT064584_1(BT064584|pid:none) Zea mays full-length cDNA clone ZM...   288   7e-89
L47337_1(L47337|pid:none) Homo sapiens transmembrane protein (TM...   283   2e-88
BC048348_1(BC048348|pid:none) Homo sapiens STT3, subunit of the ...   283   4e-88
AY891653_1(AY891653|pid:none) Synthetic construct Homo sapiens c...   283   4e-88
CQ834710_1(CQ834710|pid:none) Sequence 581 from Patent WO2004058...   283   4e-88
(P46977) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   283   4e-88
CQ834708_1(CQ834708|pid:none) Sequence 579 from Patent WO2004058...   283   4e-88
AK295892_1(AK295892|pid:none) Homo sapiens cDNA FLJ58575 complet...   283   4e-88
BT044907_1(BT044907|pid:none) Salmo salar clone ssal-rgf-507-033...   282   8e-88
BC085031_1(BC085031|pid:none) Xenopus laevis similar to intergra...   282   8e-88
protein update 2009. 5.17
PSORT 

 psg: 0.22  gvh: 0.21  alm: 0.22  top: 0.53  tms: 0.13  mit: 0.36  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VHN813 is pla
5' end seq. ID VHN813F
5' end seq. 
>VHN813F.Seq
AGTCATCAATATTGTGTGTATATGTATAATAATTGTGTATATTAGTGTATAATATATATC
TATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAAATCAAGTACATC
TGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAATGAAGTTGGTGT
TAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAATTCTATCAGTCAT
TTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGAAAGTGTTATTCA
TGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCAAGAAGGTTTTTA
TAATTTTTTAAATTGGTTTGATGAAAGAGCATGGTATCCATTAGGACGTATTGTAGGTGG
TACAATTTACCCAGGTTTAATGGCAACAGCAAGTTTAGTTCATTGGTCATTGAATTCATT
GAATATTACAGTTAATATTAGAAATGTATGTGTATTGTTATCACCATGGTTTGCATCAAA
TACAGCAATGGTAACCTATAAATTTGCCAAAGAAGTTAAGGATACACAAACTGGTTTGGT
TGCAGCAGCCATGATTGCAATTGTTNNNNNNNNNN
Length of 5' end seq. 635
3' end seq. ID VHN813Z
3' end seq. 
>VHN813Z.Seq
NNNNNNNNNNTCTCTACGCTTTCCATTGTACTTGGGTCACTAGTGAAGCCTACTCATCTC
CATCCATTGTACTCTCTGCCAAACAAAACGATGGTAGTCGTGTGATTTTCGATGATTTCC
GNTGAAGCCTACCGTTGGATTGGTCAAAATACTGCCGACGACGCTCGTATTATGTCTTGG
TGGGATTATGGTTATCAATTATCTGCAATGGCCAATCGTACCGTATTGGTTGATAATAAC
ACTTGGAACAATAGTCATATCGCTCAAGTTGGTAAAGCATTTGCATCCACTGAAGAAGAT
GCTTACATACAAATGAAAGCATTGGATGTCGATTATGTTTTAGTTATTTTTGGTGGTTTA
ACTGGTTACAGTTCTGATGATATCAATAAATTCCTTTGGATGGTTAGAATTGGTGGTAGT
TGTGATCCAAATATTAAAGAACAAGATTATCTCACCAATGGTCAATATAGAATAGATAAA
GGTGCCTCACCAACAATGTTAAATTCTCTCATGTACAAACTTAGTTACTATCGTTTCTCT
GAAGTTCACACTGACTATCAAAGACCAACAGGTTTCGATCGTGTAAGAAATGTTGAAATT
GGTAATAAAAATTTCGATTTAACTTATTTAGAAGAAGCTTTCACATCTGTTCATTGGTTA
GTTAGAGTTTATAAAGTTAAAGATTT
Length of 3' end seq. 686
Connected seq. ID VHN813P
Connected seq. 
>VHN813P.Seq
AGTCATCAATATTGTGTGTATATGTATAATAATTGTGTATATTAGTGTATAATATATATC
TATTTTTAAACAGATCAACAATAAGAAAAAAATGAAAAGATCAGAAAAATCAAGTACATC
TGTTGTTAGTAATAACAAACAACAAGATGTAAATATCATCAGTTCAAATGAAGTTGGTGT
TAAAGAAGAAAATAAAGGACATCAAGAATTCTTATTAAAAGTTTTAATTCTATCAGTCAT
TTATGTTTTAGCATTTTCAACTCGTTTATTCTCAGTATTACGTTATGAAAGTGTTATTCA
TGAATTTGATCCATATTTTAATTATAGATCAACAATATATCTTGTTCAAGAAGGTTTTTA
TAATTTTTTAAATTGGTTTGATGAAAGAGCATGGTATCCATTAGGACGTATTGTAGGTGG
TACAATTTACCCAGGTTTAATGGCAACAGCAAGTTTAGTTCATTGGTCATTGAATTCATT
GAATATTACAGTTAATATTAGAAATGTATGTGTATTGTTATCACCATGGTTTGCATCAAA
TACAGCAATGGTAACCTATAAATTTGCCAAAGAAGTTAAGGATACACAAACTGGTTTGGT
TGCAGCAGCCATGATTGCAATTGTT----------TCTCTACGCTTTCCATTGTACTTGG
GTCACTAGTGAAGCCTACTCATCTCCATCCATTGTACTCTCTGCCAAACAAAACGATGGT
AGTCGTGTGATTTTCGATGATTTCCGNTGAAGCCTACCGTTGGATTGGTCAAAATACTGC
CGACGACGCTCGTATTATGTCTTGGTGGGATTATGGTTATCAATTATCTGCAATGGCCAA
TCGTACCGTATTGGTTGATAATAACACTTGGAACAATAGTCATATCGCTCAAGTTGGTAA
AGCATTTGCATCCACTGAAGAAGATGCTTACATACAAATGAAAGCATTGGATGTCGATTA
TGTTTTAGTTATTTTTGGTGGTTTAACTGGTTACAGTTCTGATGATATCAATAAATTCCT
TTGGATGGTTAGAATTGGTGGTAGTTGTGATCCAAATATTAAAGAACAAGATTATCTCAC
CAATGGTCAATATAGAATAGATAAAGGTGCCTCACCAACAATGTTAAATTCTCTCATGTA
CAAACTTAGTTACTATCGTTTCTCTGAAGTTCACACTGACTATCAAAGACCAACAGGTTT
CGATCGTGTAAGAAATGTTGAAATTGGTAATAAAAATTTCGATTTAACTTATTTAGAAGA
AGCTTTCACATCTGTTCATTGGTTAGTTAGAGTTTATAAAGTTAAAGATTT
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -