>VHP875 (VHP875Q) /CSM/VH/VHP8-D/VHP875Q.Seq.d/
XXXXXXXXXXTCGTGGTGAGCTTCAATTAGGTATCCTTTTAGAGAATATGAGAAGAGAAG
GCTATGAAGTTGCCGTATCTCAACCAAGAGTTGTCTTTACCAAAGATGAAAATGGTAATC
TCATGGAACCACAAGAAGAGGTAACAATCGATGTCGATACCGAATATTCTGGTGCTATCA
TTGAAAAACTTTCAAAGAGAAATGGTGATATCACCGATATGAAACAATCAATGGGTAAAT
CTAGATTGGTTTTCCTCGTACCATCAAGAGGTTTAATTGGTTTAAGAAGTGAAATCATCA
ATGATACCAAAGGTACCGGTGTCATGAATCATTTATTCCACTCTTATGTACCACATAAAG
GTCCAATGGATAACAAAGAGAAAGGTGCTTTAATTTCAATGAGTGAAGGTGTTGCCACTG
CTTTCTCATTAAGTGCTCTCGAAGATAGAGGTGTTCTCTTTATTGGCCCACAAACTCAAG
TTTACTCTGGTATGATCATTGGTGAAAACTCAAAATTAACTGATTTAGATGTTAATCCAG
TTAAATCCAAACAATTAACAAACATTAGAACTACAGTCAAAGAAGAGGGTATCCGTCTCT
CTCCTCCAAAATTATTAAAATTAGAAGAAGCTATTGCTTGTGTCAA

---RGELQLGILLENMRREGYEVAVSQPRVVFTKDENGNLMEPQEEVTIDVDTEYSGAII
EKLSKRNGDITDMKQSMGKSRLVFLVPSRGLIGLRSEIINDTKGTGVMNHLFHSYVPHKG
PMDNKEKGALISMSEGVATAFSLSALEDRGVLFIGPQTQVYSGMIIGENSKLTDLDVNPV
KSKQLTNIRTTVKEEGIRLSPPKLLKLEEAIACV

Frame A:
---RGELQLGILLENMRREGYEVAVSQPRVVFTKDENGNLMEPQEEVTIDVDTEYSGAII
EKLSKRNGDITDMKQSMGKSRLVFLVPSRGLIGLRSEIINDTKGTGVMNHLFHSYVPHKG
PMDNKEKGALISMSEGVATAFSLSALEDRGVLFIGPQTQVYSGMIIGENSKLTDLDVNPV
KSKQLTNIRTTVKEEGIRLSPPKLLKLEEAIACV


Frame B:
---vvsfn*vsf*ri*eekamklpylnqelslpkmkmviswnhkkr*qsmsipnilvlsl
knfqremvispi*nnqwvnldwfssyhqev*lv*evkssmipkvpvs*iiystlmyhikv
qwitkrkvl*fq*vkvlpllsh*vlskievfsllahklkftlv*slvktqn*li*mliql
npnn*qtlelqskkrvsvsllqny*n*kklllvs


Frame C:
---w*asirypfreyekrrl*scristksclyqr*kw*shgttrrgnnrcryrifwcyh*
ktfkekw*yhryeting*i*igfprtikrfnwfkk*nhq*yqryrchesfipllctt*rs
ng*qrercfnfne*rcchcflikcsrr*rcslywptnssllwydhw*klkin*frc*ss*
iqtinkh*nysqrrgypslsskiikirrsyclcq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP875 (VHP875Q) /CSM/VH/VHP8-D/VHP875Q.Seq.d/                       1261   0.0
SSL814 (SSL814Q) /CSM/SS/SSL8-A/SSL814Q.Seq.d/                         38   0.16
SSK728 (SSK728Q) /CSM/SS/SSK7-B/SSK728Q.Seq.d/                         38   0.16
SSE576 (SSE576Q) /CSM/SS/SSE5-D/SSE576Q.Seq.d/                         38   0.16
SLI848 (SLI848Q) /CSM/SL/SLI8-B/SLI848Q.Seq.d/                         38   0.16
SLC333 (SLC333Q) /CSM/SL/SLC3-B/SLC333Q.Seq.d/                         38   0.16
SLA620 (SLA620Q) /CSM/SL/SLA6-A/SLA620Q.Seq.d/                         38   0.16
VSJ835 (VSJ835Q) /CSM/VS/VSJ8-B/VSJ835Q.Seq.d/                         36   0.64
VSG667 (VSG667Q) /CSM/VS/VSG6-C/VSG667Q.Seq.d/                         36   0.64
VSG106 (VSG106Q) /CSM/VS/VSG1-A/VSG106Q.Seq.d/                         36   0.64

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1261   0.0    1
AE017163|AE017163.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 3 of 6 of the complete genome.    46   7e-04  7
AC009410|AC009410.3 Homo sapiens BAC clone RP11-335M11 from 2, complete sequence.    38   0.007  8
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    32   0.026  11
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    34   0.032  8
BS000096|BS000096.1 Pan troglodytes chromosome 22 clone:PTB-103C09, map 22, complete sequences.    34   0.39   6
AC108734|AC108734.10 Homo sapiens 3 BAC RP11-259P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46   0.56   1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   0.68   10
AC113605|AC113605.1 Homo sapiens chromosome 4 clone RP11-17P18, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   1.6    5
BE924338|BE924338.1 EST428107 potato leaves and petioles Solanum tuberosum cDNA clone cSTB29I4 5' sequence, mRNA sequence.    32   1.7    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_90(AC116979|pid:none) Dictyostelium discoideum chromoso...   412   e-114
CP001391_175(CP001391|pid:none) Wolbachia sp. wRi, complete geno...   253   4e-66
AM999887_164(AM999887|pid:none) Wolbachia endosymbiont of Culex ...   250   3e-65
AE017321_61(AE017321|pid:none) Wolbachia endosymbiont strain TRS...   248   8e-65
GN121009_1(GN121009|pid:none) Sequence 3905 from Patent WO200903...   245   7e-64
CP001102_682(CP001102|pid:none) Candidatus Amoebophilus asiaticu...   243   5e-63
CP000356_2286(CP000356|pid:none) Sphingopyxis alaskensis RB2256,...   241   1e-62
FP312974_7(FP312974|pid:none) uncultured bacterial clone magm950...   241   1e-62
BX572594_88(BX572594|pid:none) Rhodopseudomonas palustris CGA009...   241   1e-62
GN120969_1(GN120969|pid:none) Sequence 3865 from Patent WO200903...   241   1e-62

 psg: 0.75  gvh: 0.31  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for VHP875 is cyt

>VHP875Z.Seq
NNNNNNNNNNTCGTGGTGAGCTTCAATTAGGTATCCTTTTAGAGAATATGAGAAGAGAAG
GCTATGAAGTTGCCGTATCTCAACCAAGAGTTGTCTTTACCAAAGATGAAAATGGTAATC
TCATGGAACCACAAGAAGAGGTAACAATCGATGTCGATACCGAATATTCTGGTGCTATCA
TTGAAAAACTTTCAAAGAGAAATGGTGATATCACCGATATGAAACAATCAATGGGTAAAT
CTAGATTGGTTTTCCTCGTACCATCAAGAGGTTTAATTGGTTTAAGAAGTGAAATCATCA
ATGATACCAAAGGTACCGGTGTCATGAATCATTTATTCCACTCTTATGTACCACATAAAG
GTCCAATGGATAACAAAGAGAAAGGTGCTTTAATTTCAATGAGTGAAGGTGTTGCCACTG
CTTTCTCATTAAGTGCTCTCGAAGATAGAGGTGTTCTCTTTATTGGCCCACAAACTCAAG
TTTACTCTGGTATGATCATTGGTGAAAACTCAAAATTAACTGATTTAGATGTTAATCCAG
TTAAATCCAAACAATTAACAAACATTAGAACTACAGTCAAAGAAGAGGGTATCCGTCTCT
CTCCTCCAAAATTATTAAAATTAGAAGAAGCTATTGCTTGTGTCAA