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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSA574
Library VS
(Link to library)
Clone ID VSA574
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U06279-1
Original site URL
Representative seq. ID VSA574E
(Link to Original site)
Representative DNA sequence 
>VSA574 (VSA574Q) /CSM/VS/VSA5-D/VSA574Q.Seq.d/
AAATAAAATGCCTTGTTTATATATCTGTGGTGAATGTGGTGCTGAGCACGAAATCAAACC
AAAAGAACCAGTAAAATGCAAAGATTGCACTCATCGTATTATGTACAAAAAGAGAACCGA
TAAAATGATTCAATTCGAAGCAAGATAAAAAAAAGAAAAAAAGAGAAAAAAGAAAAAAAA
AAAAAACAAAACAAAATCAAATCAATTAAAATATACCAAAACACAACAATATACATAAAA
AAAACTAAAAAAAAACTAAAAAAAGAAAAGAAAAAAAAAAAATAGCTTAAAACAGCAACA
ACTTGTACACAGACCTTTAAATAAACAATTACCTTTTTTTTAAGTTAAAAAAAAAAAAAA
A
sequence update 2000. 2.21
Translated Amino Acid sequence 
k*nalfiylw*mwc*arnqtkrtskmqrlhssyyvqkenr*NDSIRSKIKKRKKEKKEKK
KKQNKIKSIKIYQNTTIYIKKTKKKLKKEKKKKK*lktattctqtfk*titffls*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
k*nalfiylw*mwc*arnqtkrtskmqrlhssyyvqkenr*NDSIRSKIKKRKKEKKEKK
KKQNKIKSIKIYQNTTIYIKKTKKKLKKEKKKKK*lktattctqtfk*titffls*kkkk


Frame B:
nkmpclyicgecgaeheikpkepvkckdcthrimykkrtdkmiqfear*kkekkrkkkkk
knktksnqlkytktqqyt*kklkkn*kkkrkkknslkqqqlvhrplnkqlpff*vkkkkk


Frame C:
ikclvyisvvnvvlstksnqknq*nakialivlctkrepik*fnskqdkkkkkrekrkkk
ktkqnqin*nipkhnnihkkn*kktkkrkekkkia*nsnnlytdl*innylffklkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA574 (VSA574Q) /CSM/VS/VSA5-D/VSA574Q.Seq.d/                        289   1e-77
VSK248 (VSK248Q) /CSM/VS/VSK2-B/VSK248Q.Seq.d/                        101   7e-21
VHB586 (VHB586Q) /CSM/VH/VHB5-D/VHB586Q.Seq.d/                         34   1.4
VSJ658 (VSJ658Q) /CSM/VS/VSJ6-C/VSJ658Q.Seq.d/                         32   5.4
VSJ385 (VSJ385Q) /CSM/VS/VSJ3-D/VSJ385Q.Seq.d/                         32   5.4
VSJ330 (VSJ330Q) /CSM/VS/VSJ3-B/VSJ330Q.Seq.d/                         32   5.4
VSJ281 (VSJ281Q) /CSM/VS/VSJ2-D/VSJ281Q.Seq.d/                         32   5.4
VSJ188 (VSJ188Q) /CSM/VS/VSJ1-D/VSJ188Q.Seq.d/                         32   5.4
VSI753 (VSI753Q) /CSM/VS/VSI7-C/VSI753Q.Seq.d/                         32   5.4
VSI653 (VSI653Q) /CSM/VS/VSI6-C/VSI653Q.Seq.d/                         32   5.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U20867|U20867.1 Schizosaccharomyces pombe RNA polymerase small Zn-binding subunit (rpc10) mRNA, complete cds.    46  0.29  1
D89634|D89634.1 Schizosaccharomyces pombe rpb12 gene for RNA polymerase II subunit Rpb12, complete cds.    46  0.29  1
U80217|U80217.1 Schizosaccharomyces pombe RNA polymerases I-III common subunit Rpc10 (rpc10+) mRNA, complete cds.    46  0.29  1
AF027819|AF027819.1 Schizosaccharomyces pombe RNA polymerases I, II and III subunit Rpc10 (rpc10+) gene, complete cds.    46  0.29  1
X82444|X82444.1 S.pombe pmt1+ gene.                               46  0.29  1
AC109387|AC109387.5 Rattus norvegicus clone CH230-85G15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    44  1.2  1
AC111317|AC111317.5 Rattus norvegicus clone CH230-243G21, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44  1.2  1
AC123405|AC123405.4 Rattus norvegicus clone CH230-386E9, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  1.2  1
AL109731|AL109731.1 S.pombe chromosome II cosmid c19C2.           46  1.5  3
BH150853|BH150853.1 ENTPM15TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  2.7  2
dna update 2003. 9.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT056820_1(BT056820|pid:none) Salmo salar clone ssal-evd-509-226...    69   7e-11
BC072756_1(BC072756|pid:none) Xenopus laevis polymerase (RNA) II...    69   7e-11
(P53803) RecName: Full=DNA-directed RNA polymerases I, II, and I...    69   7e-11
AK018914_1(AK018914|pid:none) Mus musculus adult male testis cDN...    69   7e-11
AK008136_1(AK008136|pid:none) Mus musculus adult male small inte...    69   7e-11
BC150398_1(BC150398|pid:none) Danio rerio zgc:171795, mRNA (cDNA...    67   3e-10
BT077830_1(BT077830|pid:none) Lepeophtheirus salmonis Pacific fo...    66   3e-10
BT077417_1(BT077417|pid:none) Lepeophtheirus salmonis Pacific fo...    66   4e-10
BT070711_1(BT070711|pid:none) Picea sitchensis clone WS02745_N23...    66   4e-10
EU968496_1(EU968496|pid:none) Zea mays clone 321487 DNA-directed...    66   4e-10
protein update 2009. 7.27
PSORT 

 psg: 0.04  gvh: -0.06  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.69  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for VSA574 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID VSA574E
Full length Seq. 
>VSA574E.Seq
AAATAAAATGCCTTGTTTATATATCTGTGGTGAATGTGGTGCTGAGCACGAAATCAAACC
AAAAGAACCAGTAAAATGCAAAGATTGCACTCATCGTATTATGTACAAAAAGAGAACCGA
TAAAATGATTCAATTCGAAGCAAGATAAAAAAAAGAAAAAAAGAGAAAAAAGAAAAAAAA
AAAAAACAAAACAAAATCAAATCAATTAAAATATACCAAAACACAACAATATACATAAAA
AAAACTAAAAAAAAACTAAAAAAAGAAAAGAAAAAAAAAAAATAGCTTAAAACAGCAACA
ACTTGTACACAGACCTTTAAATAAACAATTACCTTTTTTTTAAGTTAAAAAAAAAAAAAA
A
Length of full length seq. 361