>VSA725 (VSA725Q) /CSM/VS/VSA7-B/VSA725Q.Seq.d/
XXXXXXXXXXAAAAATCCGTCAGTTAAAAAATCATTTCAATTATATGTTATATTAGTCAT
TGTCGTAAAAAAAAATTAATGATTTCATTATTTTATTTAAAAATACGAATTTTAAAAACC
ATCAAAAAAAATTGTAAATTATTTTTTTTTTTTATATAAAAAAAAAAAAAATTAATAAAT
TGTATATTATATGTAAATTAATATTTCT

---ksvs*KIISIICYISHCRKKKLMISLFYLKIRILKTIKKNCKLFFFFI*kkkklinc
ilyvn*yf

Frame A:
---kirqlknhfnymly*sls*kkindfiilfkntnfknhqkkl*iifffyikkkkinkl
yiicklif


Frame B:
---ksvs*KIISIICYISHCRKKKLMISLFYLKIRILKTIKKNCKLFFFFI*kkkklinc
ilyvn*yf


Frame C:
---npsvkksfqlyvilvivvkkn**fhyfi*kyef*kpskkivnyffflykkkkn**iv
yym*inis

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA725 (VSA725Q) /CSM/VS/VSA7-B/VSA725Q.Seq.d/                        190   6e-48
SSL846 (SSL846Q) /CSM/SS/SSL8-B/SSL846Q.Seq.d/                         42   0.003
SSI665 (SSI665Q) /CSM/SS/SSI6-C/SSI665Q.Seq.d/                         42   0.003
SSF120 (SSF120Q) /CSM/SS/SSF1-A/SSF120Q.Seq.d/                         42   0.003
AHO865 (AHO865Q) /CSM/AH/AHO8-C/AHO865Q.Seq.d/                         42   0.003
VHO446 (VHO446Q) /CSM/VH/VHO4-B/VHO446Q.Seq.d/                         40   0.012
VHN725 (VHN725Q) /CSM/VH/VHN7-B/VHN725Q.Seq.d/                         40   0.012
SSC889 (SSC889Q) /CSM/SS/SSC8-D/SSC889Q.Seq.d/                         40   0.012
SSC628 (SSC628Q) /CSM/SS/SSC6-B/SSC628Q.Seq.d/                         40   0.012
SSC396 (SSC396Q) /CSM/SS/SSC3-D/SSC396Q.Seq.d/                         40   0.012

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                 42  1e-05  4
AE014083|AE014083.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 8 of 57 of the complete genome.    36  6e-05  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           40  6e-05  4
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    40  2e-04  5
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  4e-04  5
CA773419|CA773419.1 im63h05.y1 HR85 islet Homo sapiens cDNA clone IMAGE:6039801 5', mRNA sequence.    38  0.002  2
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.        40  0.002  4
AC096137|AC096137.5 Rattus norvegicus clone CH230-26O5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52  0.003  1
AX346979|AX346979.1 Sequence 2050 from Patent WO0200928.          36  0.003  3
AX345157|AX345157.1 Sequence 228 from Patent WO0200928.           32  0.004  6

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 137,446,008

 psg: 0.94  gvh: 0.38  alm: 0.43  top: 0.77  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic

>> prediction for VSA725 is mit

>VSA725Z.Seq
----------AAAAATCCGTCAGTTAAAAAATCATTTCAATTATATGTTATATTAGTCAT
TGTCGTAAAAAAAAATTAATGATTTCATTATTTTATTTAAAAATACGAATTTTAAAAACC
ATCAAAAAAAATTGTAAATTATTTTTTTTTTTTATATAAAAAAAAAAAAAATTAATAAAT
TGTATATTATATGTAAATTAATATTTCT